Variant report

Variant	rs1393026
Chromosome Location	chr1:211153359-211153360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10494931	0.81[CEU][hapmap]
rs10494932	0.81[CEU][hapmap]
rs10863870	0.82[EUR][1000 genomes]
rs10863874	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11119658	0.81[CEU][hapmap]
rs11485203	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11578692	0.98[AFR][1000 genomes]
rs11579078	0.96[AFR][1000 genomes]
rs11582507	0.81[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11583101	0.81[CEU][hapmap]
rs12750762	0.90[AFR][1000 genomes]
rs12751504	0.82[AFR][1000 genomes]
rs12752336	0.82[AFR][1000 genomes]
rs12760791	0.80[ASW][hapmap];0.81[CEU][hapmap]
rs1393028	0.81[CEU][hapmap]
rs1501551	0.88[LWK][hapmap];0.92[YRI][hapmap]
rs1501558	0.93[ASW][hapmap];0.81[CEU][hapmap];0.88[LWK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs1501566	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[EUR][1000 genomes]
rs1501567	0.81[EUR][1000 genomes]
rs1501568	0.81[EUR][1000 genomes]
rs1501569	0.92[CEU][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs1539531	0.92[CEU][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap];0.80[EUR][1000 genomes]
rs17188741	0.90[AFR][1000 genomes]
rs17188748	0.88[CEU][hapmap];0.87[YRI][hapmap]
rs1875435	0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs2221250	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs2358214	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs33985151	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs35711968	0.96[EUR][1000 genomes]
rs4314946	0.84[EUR][1000 genomes]
rs4638187	0.98[AFR][1000 genomes]
rs61848994	0.81[EUR][1000 genomes]
rs6669457	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[EUR][1000 genomes]
rs6678283	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6697578	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs6702598	0.94[AFR][1000 genomes]
rs7414286	0.88[AFR][1000 genomes]
rs7517771	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7535286	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7536519	1.00[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs9662051	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524740	chr1:211143108-211155614	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
2	nsv524860	chr1:211152696-211155614	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1393026	IKBKE	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152400-211154200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:211152600-211169400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211152800-211183400	Weak transcription	HSMMtube	muscle
4	chr1:211153200-211154200	Strong transcription	HSMM	muscle

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