Variant report

Variant	rs1394655
Chromosome Location	chr5:15880591-15880592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10058620	1.00[AMR][1000 genomes]
rs1354184	1.00[AMR][1000 genomes]
rs16867796	1.00[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.85[YRI][hapmap]
rs16867814	0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867815	0.83[MKK][hapmap]
rs16867816	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs1875986	1.00[AMR][1000 genomes]
rs1875987	1.00[AMR][1000 genomes]
rs2174438	0.90[LWK][hapmap];0.80[YRI][hapmap]
rs35368404	1.00[AMR][1000 genomes]
rs4360042	1.00[AMR][1000 genomes]
rs56705466	1.00[AMR][1000 genomes]
rs60482114	1.00[AMR][1000 genomes]
rs6894588	0.90[LWK][hapmap]
rs7720693	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15865600-15885000	Weak transcription	Ovary	ovary
2	chr5:15871400-15882400	Weak transcription	Fetal Stomach	stomach
3	chr5:15876800-15880800	Enhancers	Fetal Heart	heart
4	chr5:15879600-15885600	Weak transcription	HSMMtube	muscle
5	chr5:15880000-15880600	Enhancers	Aorta	Aorta
6	chr5:15880200-15880600	Enhancers	Left Ventricle	heart
7	chr5:15880200-15880600	Enhancers	Right Ventricle	heart
8	chr5:15880400-15880600	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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