Variant report

Variant	rs139471072
Chromosome Location	chr5:74694697-74694698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882192	chr5:74641707-74707762	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv882195	chr5:74678937-74896798	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2621701	chr5:74694021-74695230	Strong transcription Genic enhancers Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74656400-74725600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:74656600-74694800	Weak transcription	Brain Angular Gyrus	brain
3	chr5:74656800-74731400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:74657800-74708000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:74659800-74720600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:74660000-74722800	Weak transcription	Fetal Heart	heart
7	chr5:74660200-74707800	Weak transcription	Stomach Mucosa	stomach
8	chr5:74665000-74703000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:74667000-74723200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:74670800-74709400	Weak transcription	Pancreas	Pancrea
11	chr5:74670800-74720600	Weak transcription	Right Ventricle	heart
12	chr5:74670800-74731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:74671000-74722800	Weak transcription	Hela-S3	cervix
14	chr5:74674400-74761400	Weak transcription	Esophagus	oesophagus
15	chr5:74675400-74694800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:74675400-74699600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:74675400-74720800	Weak transcription	Small Intestine	intestine
18	chr5:74676200-74695000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:74676200-74721000	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:74677000-74701000	Weak transcription	A549	lung
21	chr5:74677400-74722800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:74677600-74709200	Weak transcription	Gastric	stomach
23	chr5:74677600-74734200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:74677800-74694800	Weak transcription	Fetal Kidney	kidney
25	chr5:74677800-74695200	Weak transcription	Brain Anterior Caudate	brain
26	chr5:74677800-74721000	Weak transcription	NH-A	brain
27	chr5:74677800-74725000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:74677800-74731400	Weak transcription	Aorta	Aorta
29	chr5:74678000-74708000	Weak transcription	NHLF	lung
30	chr5:74678000-74720600	Weak transcription	Colonic Mucosa	Colon
31	chr5:74678000-74730800	Weak transcription	Psoas Muscle	Psoas
32	chr5:74680600-74721000	Weak transcription	HMEC	breast
33	chr5:74680800-74694800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:74680800-74722600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr5:74681000-74723200	Weak transcription	HUVEC	blood vessel
36	chr5:74681400-74694800	Weak transcription	Placenta	Placenta
37	chr5:74681400-74718400	Weak transcription	Brain Germinal Matrix	brain
38	chr5:74681600-74694800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr5:74681600-74695000	Weak transcription	Brain Substantia Nigra	brain
40	chr5:74681800-74720600	Weak transcription	Fetal Brain Male	brain
41	chr5:74682000-74695000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr5:74682000-74699000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr5:74682000-74708000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr5:74682200-74705000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:74683200-74698600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr5:74683800-74695000	Weak transcription	Fetal Brain Female	brain
47	chr5:74684000-74694800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:74684000-74695000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:74684000-74695000	Weak transcription	Ovary	ovary
50	chr5:74684000-74695600	Weak transcription	Fetal Muscle Trunk	muscle

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