Variant report

Variant	rs1396705
Chromosome Location	chr9:15732332-15732333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15732005..15734234-chr9:15736903..15738825,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10962193	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10962194	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1169470	0.80[JPT][hapmap]
rs1177610	0.80[JPT][hapmap]
rs1177611	0.80[JPT][hapmap]
rs11999303	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs12000772	0.86[CHB][hapmap]
rs12005062	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs12005485	1.00[EUR][1000 genomes]
rs12005521	1.00[EUR][1000 genomes]
rs12682808	1.00[AFR][1000 genomes]
rs12682932	0.86[CHB][hapmap]
rs12685082	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12685963	1.00[EUR][1000 genomes]
rs1536685	0.90[JPT][hapmap]
rs1536686	0.80[JPT][hapmap]
rs1536687	0.80[JPT][hapmap]
rs1578558	0.85[CHB][hapmap]
rs16933504	1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16933544	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16933805	0.90[JPT][hapmap]
rs16933814	0.90[JPT][hapmap]
rs1815697	0.80[JPT][hapmap]
rs2066291	0.86[CHB][hapmap]
rs2105314	0.80[JPT][hapmap]
rs2794624	0.80[JPT][hapmap]
rs2794628	0.80[JPT][hapmap]
rs2794632	0.80[JPT][hapmap]
rs2987061	0.80[JPT][hapmap]
rs3008691	0.80[JPT][hapmap]
rs3008693	0.80[JPT][hapmap]
rs3008698	0.80[JPT][hapmap]
rs34816651	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4372097	1.00[CHB][hapmap]
rs59761231	0.84[ASN][1000 genomes]
rs60572069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474950	0.82[ASN][1000 genomes]
rs6474968	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7021778	1.00[JPT][hapmap]
rs7022810	0.87[ASN][1000 genomes]
rs7026090	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs7029375	0.86[CHB][hapmap]
rs7029410	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs7032595	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7035048	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7039881	0.86[CHB][hapmap]
rs7040071	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs7040549	1.00[EUR][1000 genomes]
rs7040580	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs7044984	0.90[JPT][hapmap]
rs73416209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416213	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73416233	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73416254	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73416261	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73416267	0.91[ASN][1000 genomes]
rs73416285	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7388793	0.86[CHB][hapmap]
rs770194	0.85[CHB][hapmap]
rs770198	0.86[CHB][hapmap]
rs770199	0.86[CHB][hapmap]
rs770200	0.86[CHB][hapmap]
rs770201	0.86[CHB][hapmap]
rs770202	0.86[CHB][hapmap]
rs770207	0.80[JPT][hapmap]
rs7847946	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7852250	0.86[CHB][hapmap]
rs7854094	0.91[ASN][1000 genomes]
rs7861533	1.00[EUR][1000 genomes]
rs7866699	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7867018	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs7869609	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7870166	0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7870244	0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7875957	0.81[ASN][1000 genomes]
rs906798	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv32957	chr9:15720059-15737099	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15679800-15746800	Weak transcription	Ovary	ovary
2	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
3	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
4	chr9:15715600-15733800	Weak transcription	Brain Anterior Caudate	brain
5	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:15718600-15746600	Weak transcription	Thymus	Thymus
7	chr9:15720400-15733400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:15720600-15735200	Weak transcription	Adipose Nuclei	Adipose
9	chr9:15725400-15734600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:15727600-15732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:15729000-15746800	Weak transcription	Fetal Thymus	thymus
12	chr9:15731000-15732600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:15732000-15733200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:15732000-15734000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:15732000-15735200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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