Variant report

Variant	rs1397049
Chromosome Location	chr11:56370355-56370356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10466676	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs11228609	0.85[CEU][hapmap]
rs11228659	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs11228683	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11228703	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11606499	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12271019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12290501	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12292656	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs13377553	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1945270	1.00[CEU][hapmap]
rs28362018	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41391545	1.00[CEU][hapmap]
rs55677906	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66602972	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67907199	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7111150	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs7112358	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7119529	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7121276	1.00[CEU][hapmap]
rs7483053	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7948303	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1037096	chr11:56332750-56380919	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3384407	chr11:56344917-56380827	Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3398628	chr11:56344934-56380760	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv982949	chr11:56361311-56395993	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv971952	chr11:56361311-56452186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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