Variant report

Variant	rs139759147
Chromosome Location	chr11:76091289-76091290
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:76091064-76091909	MCF-7	breast:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
2	ZNF143	chr11:76091212-76092713	Hela-S3	cervix:	n/a	chr11:76092165-76092180 chr11:76091675-76091685 chr11:76091907-76091925
3	MAZ	chr11:76090859-76093234	IMR90	lung:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
4	POLR2A	chr11:76091168-76092689	Hela-S3	cervix:	n/a	n/a
5	MAZ	chr11:76091271-76092521	K562	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
6	EGR1	chr11:76091259-76091487	GM12878	blood:	n/a	n/a
7	CHD2	chr11:76091154-76092616	Hela-S3	cervix:	n/a	chr11:76092132-76092142
8	SIN3AK20	chr11:76091246-76091924	K562	blood:	n/a	n/a
9	E2F6	chr11:76091224-76092688	K562	blood:	n/a	chr11:76091916-76091925 chr11:76092133-76092145 chr11:76092363-76092372 chr11:76092116-76092126 chr11:76091524-76091533 chr11:76092310-76092319 chr11:76092113-76092123 chr11:76091727-76091737
10	RUNX3	chr11:76090991-76091626	GM12878	blood:	n/a	n/a
11	POLR2A	chr11:76091086-76091882	H1-neurons	neurons:	n/a	n/a
12	UBTF	chr11:76091266-76092627	K562	blood:	n/a	n/a
13	RCOR1	chr11:76091152-76091578	K562	blood:	n/a	n/a
14	RUNX3	chr11:76091082-76091648	GM12878	blood:	n/a	n/a
15	MAX	chr11:76091123-76092791	Hela-S3	cervix:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
16	USF2	chr11:76091156-76091356	Hela-S3	cervix:	n/a	n/a
17	WRNIP1	chr11:76091241-76091424	GM12878	blood:	n/a	n/a
18	HCFC1	chr11:76090021-76093194	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr11:76091258-76092644	GM19099	blood:	n/a	n/a
20	ZNF143	chr11:76091246-76092472	GM12878	blood:	n/a	chr11:76092165-76092180 chr11:76091675-76091685 chr11:76091907-76091925
21	CUX1	chr11:76090806-76091313	K562	blood:	n/a	n/a
22	RCOR1	chr11:76091267-76091523	Hela-S3	cervix:	n/a	n/a
23	SIN3A	chr11:76091160-76091633	GM12878	blood:	n/a	chr11:76091564-76091577
24	POLR2A	chr11:76091077-76092647	Hela-S3	cervix:	n/a	n/a
25	SIN3A	chr11:76091073-76092795	H1-hESC	embryonic stem cell:	n/a	chr11:76092047-76092060 chr11:76091564-76091577
26	RFX5	chr11:76090956-76091516	Hela-S3	cervix:	n/a	n/a
27	MAX	chr11:76091206-76091920	ECC-1	luminal epithelium:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
28	POLR2A	chr11:76091123-76092703	Hela-S3	cervix:	n/a	n/a
29	SMC3	chr11:76091172-76091560	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr11:76091258-76092649	Hela-S3	cervix:	n/a	n/a
31	MAX	chr11:76091142-76091938	K562	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
32	SIN3AK20	chr11:76091105-76091932	PANC-1	pancreas:	n/a	n/a
33	POLR2A	chr11:76091249-76092600	K562	blood:	n/a	n/a
34	SIN3AK20	chr11:76091017-76091598	H1-hESC	embryonic stem cell:	n/a	n/a
35	MYC	chr11:76091086-76092707	MCF10A-Er-Src	breast:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
36	MYC	chr11:76091236-76092665	K562	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
37	POLR2A	chr11:76091080-76092652	GM12878	blood:	n/a	n/a
38	CTCF	chr11:76091200-76091350	HBMEC	blood vessel:	n/a	n/a
39	MTA3	chr11:76090947-76091683	GM12878	blood:	n/a	n/a
40	EBF1	chr11:76091264-76091496	GM12878	blood:	n/a	n/a
41	SIN3AK20	chr11:76091050-76092917	MCF-7	breast:	n/a	n/a
42	POLR2A	chr11:76091144-76092644	MCF10A-Er-Src	breast:	n/a	n/a
43	MXI1	chr11:76090717-76093238	SK-N-SH	brain:	n/a	n/a
44	MAZ	chr11:76091138-76092557	Hela-S3	cervix:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
45	REST	chr11:76090993-76093222	H1-neurons	neurons:	n/a	chr11:76092047-76092060
46	SMARCB1	chr11:76091238-76092728	Hela-S3	cervix:	n/a	n/a
47	MAX	chr11:76091282-76092859	GM12878	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
48	MAX	chr11:76091261-76091908	A549	lung:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
49	TCF7L2	chr11:76091201-76091398	PANC-1	pancreas:	n/a	n/a
50	TBL1XR1	chr11:76090991-76091292	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:76079303..76082514-chr11:76090617..76092781,5	K562	blood:
2	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:
3	chr1:70686774..70687532-chr11:76091229..76092168,2	HCT-116	colon:
4	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:
5	chr11:76090234..76093573-chr11:76154824..76158196,8	MCF-7	breast:
6	chr11:76090615..76095251-chr11:76152894..76157527,10	K562	blood:
7	chr11:76071533..76073218-chr11:76090981..76092790,2	K562	blood:
8	chr11:76091181..76093702-chr11:76114020..76116665,2	K562	blood:

Variant related genes	Relation type
ENSG00000179240	TF binding region
ENSG00000158636	Chromatin interaction
ENSG00000271757	Chromatin interaction
ENSG00000137492	Chromatin interaction
ENSG00000272301	Chromatin interaction
ENSG00000255135	Chromatin interaction
ENSG00000201756	Chromatin interaction
ENSG00000116754	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440498	chr11:76090729-76093277	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76090200-76091400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
2	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:76090200-76093400	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:76090400-76091400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:76090400-76091400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:76090400-76091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:76090400-76091400	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr11:76090400-76091400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr11:76090400-76091400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr11:76090400-76091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:76090400-76091400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:76090400-76091400	Flanking Active TSS	Liver	Liver
14	chr11:76090400-76091400	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr11:76090400-76091400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:76090400-76091400	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr11:76090400-76091400	Flanking Active TSS	Fetal Brain Male	brain
18	chr11:76090400-76091400	Flanking Active TSS	Psoas Muscle	Psoas
19	chr11:76090400-76091400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr11:76090400-76091400	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr11:76090400-76091400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr11:76090400-76092800	Active TSS	H1 Cell Line	embryonic stem cell
23	chr11:76090400-76093000	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr11:76090600-76091400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr11:76090600-76091400	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr11:76090600-76091400	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr11:76090600-76091400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr11:76090600-76091400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr11:76090600-76091400	Flanking Active TSS	Thymus	Thymus
30	chr11:76090600-76091400	Flanking Active TSS	HUVEC	blood vessel
31	chr11:76090600-76091600	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr11:76090600-76091600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:76090600-76091600	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr11:76090600-76091600	Active TSS	Right Atrium	heart
35	chr11:76090600-76091800	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr11:76090600-76092600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:76090600-76092600	Active TSS	HSMM	muscle
38	chr11:76090600-76093000	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr11:76090600-76093000	Active TSS	Pancreas	Pancrea
40	chr11:76090600-76093400	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr11:76090600-76093400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:76090600-76093400	Active TSS	Lung	lung
43	chr11:76090800-76091400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr11:76090800-76091400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:76090800-76091400	Flanking Active TSS	Fetal Intestine Large	intestine
46	chr11:76090800-76091400	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr11:76090800-76091400	Flanking Active TSS	Placenta	Placenta
48	chr11:76090800-76091400	Flanking Active TSS	Fetal Stomach	stomach
49	chr11:76090800-76091600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr11:76090800-76092400	Active TSS	HMEC	breast

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