Variant report

Variant	rs139812117
Chromosome Location	chr4:120399275-120399276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120394266..120396422-chr4:120397553..120399819,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC110373.1-8	chr4:120399034-120399542	NONHSAT098084

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv879842	chr4:120244085-120424087	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv427694	chr4:120250511-120501728	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv879843	chr4:120326323-120502461	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv879844	chr4:120341296-120449810	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv879846	chr4:120341296-120491714	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv879845	chr4:120341296-120502461	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv879847	chr4:120371729-120450159	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv964092	chr4:120392750-120412350	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
13	esv1802153	chr4:120397829-120457682	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120376400-120471600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:120376600-120401200	Weak transcription	Psoas Muscle	Psoas
3	chr4:120376600-120419200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:120377000-120416000	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:120377200-120400000	Weak transcription	Esophagus	oesophagus
6	chr4:120377200-120400600	Weak transcription	A549	lung
7	chr4:120377200-120401000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:120377200-120403400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:120377200-120415600	Weak transcription	Brain Substantia Nigra	brain
10	chr4:120377200-120416200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr4:120377200-120419600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:120377200-120433800	Weak transcription	Gastric	stomach
13	chr4:120377400-120399800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:120377400-120400200	Weak transcription	Ovary	ovary
15	chr4:120377400-120400400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:120377400-120400600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:120377400-120400600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:120377400-120401000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:120377400-120403000	Weak transcription	Fetal Brain Female	brain
20	chr4:120377400-120415200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:120377400-120416200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:120377400-120439000	Weak transcription	Small Intestine	intestine
23	chr4:120377400-120439000	Weak transcription	Spleen	Spleen
24	chr4:120377600-120400400	Weak transcription	Brain Germinal Matrix	brain
25	chr4:120377600-120401000	Weak transcription	HMEC	breast
26	chr4:120377600-120402200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:120377600-120403000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:120377600-120441000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr4:120377600-120501200	Weak transcription	Pancreas	Pancrea
30	chr4:120377800-120400800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:120384400-120439200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr4:120384600-120400000	Weak transcription	Osteobl	bone
33	chr4:120384600-120416200	Weak transcription	Fetal Brain Male	brain
34	chr4:120385600-120403000	Weak transcription	Fetal Kidney	kidney
35	chr4:120385800-120400400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr4:120387000-120402600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:120387400-120403600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr4:120387600-120400400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:120387800-120401200	Weak transcription	NHLF	lung
40	chr4:120388000-120400200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr4:120388600-120402400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:120389000-120399800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr4:120390400-120401000	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:120390400-120409400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:120390600-120400000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr4:120390600-120409200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:120390800-120400400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:120390800-120419800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:120391600-120401000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:120391600-120408800	Weak transcription	NHDF-Ad	bronchial

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