Variant report

Variant	rs139942291
Chromosome Location	chr15:34457838-34457839
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34445400-34459600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:34445800-34459400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr15:34453600-34461000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:34453800-34458400	Weak transcription	Psoas Muscle	Psoas
6	chr15:34454000-34458200	Weak transcription	Right Ventricle	heart
7	chr15:34454000-34458400	Weak transcription	NH-A	brain
8	chr15:34454000-34477400	Weak transcription	HSMM	muscle
9	chr15:34454200-34458000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:34454200-34497800	Weak transcription	Osteobl	bone
11	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
12	chr15:34454800-34465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:34455000-34458200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:34455000-34458200	Weak transcription	Esophagus	oesophagus
16	chr15:34455000-34458400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:34455000-34458400	Weak transcription	Liver	Liver
18	chr15:34455000-34458400	Weak transcription	Left Ventricle	heart
19	chr15:34455000-34458400	Weak transcription	HepG2	liver
20	chr15:34455000-34458800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:34455000-34459600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:34455000-34460600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:34455000-34460800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:34455000-34461400	Weak transcription	Primary T cells from cord blood	blood
25	chr15:34455000-34463400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:34455200-34458000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:34455200-34458000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:34455200-34458200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:34455200-34458200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:34455200-34458200	Weak transcription	Aorta	Aorta
31	chr15:34455200-34458200	Weak transcription	Placenta	Placenta
32	chr15:34455200-34458200	Weak transcription	Fetal Stomach	stomach
33	chr15:34455200-34458200	Weak transcription	Gastric	stomach
34	chr15:34455200-34458400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:34455200-34458400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:34455200-34458400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr15:34455200-34458400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:34455200-34458400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr15:34455200-34458400	Weak transcription	Lung	lung
40	chr15:34455200-34458600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr15:34455200-34458600	Weak transcription	Fetal Thymus	thymus
42	chr15:34455200-34458800	Weak transcription	HUVEC	blood vessel
43	chr15:34455200-34459000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:34455200-34459200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:34455200-34459800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:34455200-34460400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:34455200-34460600	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:34455200-34464400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:34455200-34464600	Weak transcription	Ovary	ovary
50	chr15:34455200-34464600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links