Variant report

Variant	rs140182715
Chromosome Location	chr15:76626653-76626654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr15:76626075-76626661	MCF-7	breast:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
2	CEBPB	chr15:76626251-76626857	HepG2	liver:	n/a	n/a
3	CTCF	chr15:76626580-76626730	HCPEpiC	choroid plexus:	n/a	n/a
4	MXI1	chr15:76625829-76626712	HepG2	liver:	n/a	n/a
5	RAD21	chr15:76626013-76626689	MCF-7	breast:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
6	CTCF	chr15:76626600-76626750	A549	lung:	n/a	n/a
7	CTCF	chr15:76625996-76626697	SK-N-SH	brain:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
8	RCOR1	chr15:76626178-76627069	K562	blood:	n/a	n/a
9	BCL3	chr15:76625999-76626831	A549	lung:	n/a	n/a
10	RAD21	chr15:76626064-76626779	A549	lung:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
11	POLR2A	chr15:76625979-76626684	HepG2	liver:	n/a	n/a
12	RCOR1	chr15:76626205-76627119	K562	blood:	n/a	n/a
13	POLR2A	chr15:76626416-76626655	HepG2	liver:	n/a	n/a
14	MAZ	chr15:76626137-76626756	K562	blood:	n/a	n/a
15	RAD21	chr15:76625843-76626765	SK-N-SH	brain:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
16	ZC3H11A	chr15:76626301-76626656	K562	blood:	n/a	n/a
17	CTCF	chr15:76625783-76626790	A549	lung:	n/a	chr15:76625824-76625832 chr15:76626363-76626376 chr15:76626361-76626379
18	RAD21	chr15:76626070-76626684	HCT-116	colon:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
19	CTCF	chr15:76626115-76626663	MCF-7	breast:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
20	MAX	chr15:76625856-76626737	HepG2	liver:	n/a	n/a
21	TBP	chr15:76626488-76626670	K562	blood:	n/a	n/a
22	SMC3	chr15:76625938-76626690	SK-N-SH	brain:	n/a	chr15:76626366-76626376 chr15:76626363-76626377

No.	Distal block	Cell Line	Cell type
1	chr15:76536052..76538600-chr15:76625414..76627527,2	MCF-7	breast:
2	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
3	chr15:76591467..76593414-chr15:76626364..76628156,2	K562	blood:
4	chr15:76598820..76601362-chr15:76625646..76628540,2	K562	blood:
5	chr15:76527312..76528369-chr15:76625920..76626784,4	MCF-7	breast:
6	chr15:76624512..76627161-chr15:76627320..76629077,4	MCF-7	breast:
7	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
8	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
9	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
10	chr15:76617028..76618858-chr15:76625946..76627693,2	MCF-7	breast:
11	chr15:76482924..76483751-chr15:76625816..76626899,5	MCF-7	breast:
12	chr15:76591467..76593995-chr15:76626637..76628156,2	K562	blood:
13	chr15:76488844..76490782-chr15:76625306..76628294,2	K562	blood:
14	chr15:76527288..76528019-chr15:76626012..76626713,2	MCF-7	breast:
15	chr15:76482740..76483457-chr15:76626133..76626814,2	MCF-7	breast:
16	chr15:76483216..76483808-chr15:76625887..76626857,3	K562	blood:
17	chr15:76577359..76578026-chr15:76626000..76626679,2	MCF-7	breast:

Variant related genes	Relation type
ISL2	TF binding region
ENSG00000140374	Chromatin interaction
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76621000-76628000	Weak transcription	HSMMtube	muscle
2	chr15:76625600-76627000	Enhancers	K562	blood
3	chr15:76626000-76626800	Flanking Active TSS	A549	lung
4	chr15:76626000-76627000	Enhancers	Hela-S3	cervix
5	chr15:76626000-76627200	Flanking Active TSS	HepG2	liver
6	chr15:76626400-76626800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr15:76626400-76626800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr15:76626400-76627400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:76626400-76627600	Strong transcription	Right Atrium	heart
10	chr15:76626600-76626800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr15:76626600-76626800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr15:76626600-76626800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:76626600-76626800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
14	chr15:76626600-76627600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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