Variant report

Variant	rs140229150
Chromosome Location	chr3:99038470-99038471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv965360	chr3:99035758-99044695	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3441998	chr3:99036487-99039035	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3357243	chr3:99036712-99038810	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv2448443	chr3:99036937-99038508	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99032000-99049200	Weak transcription	Aorta	Aorta
2	chr3:99034600-99040000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:99034800-99040200	Enhancers	NHDF-Ad	bronchial
4	chr3:99035600-99038800	Enhancers	NHLF	lung
5	chr3:99036600-99039800	Enhancers	Osteobl	bone
6	chr3:99036800-99040600	Enhancers	HUVEC	blood vessel
7	chr3:99037000-99039000	Enhancers	HSMM	muscle
8	chr3:99037000-99039000	Enhancers	NH-A	brain
9	chr3:99037800-99039600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:99038000-99038600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:99038000-99038800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:99038000-99040200	Weak transcription	Fetal Stomach	stomach
13	chr3:99038200-99038600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:99038200-99038800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr3:99038200-99038800	Enhancers	HSMMtube	muscle
16	chr3:99038200-99039000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:99038400-99038800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:99038400-99039200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:99038400-99039200	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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