Variant report

Variant	rs140314339
Chromosome Location	chr6:12748956-12748957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3361165	chr6:12748791-12751339	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
4	esv3432117	chr6:12748916-12751314	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12748200-12749200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
2	chr6:12748400-12749000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:12748600-12749000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:12748600-12749400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:12748800-12749000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:12748800-12749000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:12748800-12749000	Enhancers	Brain Germinal Matrix	brain
8	chr6:12748800-12750400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:12748800-12750600	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:12748800-12750600	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:12748800-12750600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:12748800-12750600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:12748800-12751000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:12748800-12752600	Active TSS	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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