Variant report

Variant	rs140354181
Chromosome Location	chr11:16915415-16915416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16914855..16917197-chr11:16922400..16924904,3	MCF-7	breast:
2	chr11:16901136..16902901-chr11:16914387..16916198,2	K562	blood:
3	chr11:16914888..16916923-chr11:16925227..16926853,2	MCF-7	breast:
4	chr11:16912383..16915657-chr11:16918244..16920114,3	K562	blood:
5	chr11:16910866..16914588-chr11:16915188..16918653,3	MCF-7	breast:
6	chr11:16883507..16885093-chr11:16913908..16916539,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16910000-16917800	Weak transcription	Lung	lung
2	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
3	chr11:16912200-16923600	Weak transcription	A549	lung
4	chr11:16912400-16919400	Weak transcription	Liver	Liver
5	chr11:16912600-16915600	Enhancers	NHDF-Ad	bronchial
6	chr11:16912600-16915800	Enhancers	HMEC	breast
7	chr11:16912600-16916000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:16912600-16916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:16912800-16915600	Enhancers	Osteobl	bone
10	chr11:16913000-16918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:16913400-16916800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:16913600-16916000	Enhancers	Pancreas	Pancrea
13	chr11:16913600-16916200	Enhancers	Left Ventricle	heart
14	chr11:16913800-16916400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:16913800-16921800	Enhancers	Fetal Heart	heart
16	chr11:16914000-16917000	Weak transcription	HSMM	muscle
17	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
18	chr11:16914200-16916000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:16914400-16915600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:16914400-16916000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr11:16914400-16916200	Enhancers	Gastric	stomach
22	chr11:16914400-16919200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:16914600-16915600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:16914600-16916000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:16914600-16921200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:16914800-16915600	Enhancers	Fetal Intestine Small	intestine
27	chr11:16914800-16915800	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr11:16915000-16915600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:16915000-16915600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:16915000-16915800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:16915000-16915800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:16915000-16915800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:16915000-16915800	Enhancers	Placenta	Placenta
34	chr11:16915000-16915800	Enhancers	Right Atrium	heart
35	chr11:16915000-16916000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:16915000-16916000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr11:16915000-16916000	Enhancers	Adipose Nuclei	Adipose
38	chr11:16915000-16917000	Enhancers	Esophagus	oesophagus
39	chr11:16915200-16915600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:16915200-16915800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr11:16915200-16915800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:16915200-16915800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
43	chr11:16915200-16915800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:16915200-16915800	Enhancers	Right Ventricle	heart
45	chr11:16915200-16916000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:16915200-16916000	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr11:16915200-16916000	Enhancers	Spleen	Spleen
48	chr11:16915400-16915600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:16915400-16918200	Weak transcription	Fetal Intestine Large	intestine
50	chr11:16915400-16918400	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links