Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10460925	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11127743	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12054089	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs12233505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12629752	1.00[CEU][hapmap];0.96[CHB][hapmap];0.81[JPT][hapmap]
rs12630587	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1524556	0.94[ASN][1000 genomes]
rs17019219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17019297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17019364	0.90[ASN][1000 genomes]
rs17019369	0.90[ASN][1000 genomes]
rs3772885	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3772888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3772897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3772899	0.86[CHB][hapmap]
rs3772902	0.86[CHB][hapmap]
rs3772904	0.91[CHB][hapmap]
rs61156634	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61540531	0.90[ASN][1000 genomes]
rs61572709	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6765293	0.87[ASN][1000 genomes]
rs6791857	0.90[ASN][1000 genomes]
rs998206	1.00[CEU][hapmap];0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81874000-81879000	Weak transcription	Fetal Heart	heart

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