Variant report

Variant	rs140430220
Chromosome Location	chr11:47405377-47405378
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47404760..47406669-chr11:47411332..47413231,2	K562	blood:
2	chr11:47397140..47399846-chr11:47404698..47406803,2	MCF-7	breast:
3	chr11:47404462..47406012-chr11:47414080..47416548,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPI1-1	chr11:47405095-47405383	ENSG00000255197.1
2	lnc-SPI1-1	chr11:47404699-47405383	ENSG00000255197.1
3	lnc-SPI1-1	chr11:47404800-47405383	ENSG00000255197.1

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv825871	chr11:47376020-47457537	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv554210	chr11:47380593-47449544	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
8	nsv541034	chr11:47404083-47440081	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47395200-47410000	Weak transcription	Gastric	stomach
2	chr11:47399400-47421400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:47399800-47405800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:47399800-47421200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:47400000-47410000	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:47400000-47415200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:47400000-47416000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:47400000-47416800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:47400000-47421200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:47400600-47409800	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:47402600-47409400	Weak transcription	Esophagus	oesophagus
12	chr11:47403200-47405400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:47403600-47405400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:47404000-47405400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
15	chr11:47404000-47405800	Genic enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:47404200-47405400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:47404200-47405400	Enhancers	Adipose Nuclei	Adipose
18	chr11:47404400-47405400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:47404400-47405400	Enhancers	Placenta	Placenta
20	chr11:47404400-47405600	Enhancers	Primary B cells from cord blood	blood
21	chr11:47404400-47412800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:47404800-47405400	Genic enhancers	Spleen	Spleen
23	chr11:47404800-47409400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:47405000-47405400	Enhancers	Right Atrium	heart
25	chr11:47405000-47410600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:47405000-47412800	Weak transcription	K562	blood
27	chr11:47405200-47409800	Weak transcription	Fetal Muscle Trunk	muscle

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