Variant report

Variant	rs1404779
Chromosome Location	chr6:64120805-64120806
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1010057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320419	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1464865	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464866	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1525354	0.92[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1525355	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1525357	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1525361	1.00[ASN][1000 genomes]
rs1608812	0.85[EUR][1000 genomes]
rs1619321	1.00[EUR][1000 genomes]
rs1621804	1.00[EUR][1000 genomes]
rs1625205	1.00[EUR][1000 genomes]
rs1628449	0.95[EUR][1000 genomes]
rs1631333	0.85[EUR][1000 genomes]
rs1711897	1.00[EUR][1000 genomes]
rs1711898	1.00[EUR][1000 genomes]
rs1711899	0.95[EUR][1000 genomes]
rs1711900	0.90[EUR][1000 genomes]
rs1711901	1.00[EUR][1000 genomes]
rs1711902	1.00[EUR][1000 genomes]
rs1711903	0.95[EUR][1000 genomes]
rs1711904	1.00[EUR][1000 genomes]
rs1711906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1711912	0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1711913	1.00[EUR][1000 genomes]
rs1711914	1.00[EUR][1000 genomes]
rs1711915	1.00[EUR][1000 genomes]
rs1711918	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1711919	0.85[EUR][1000 genomes]
rs1711927	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711928	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1723497	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1723498	1.00[EUR][1000 genomes]
rs1723499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723502	0.90[EUR][1000 genomes]
rs1723503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1723504	0.95[EUR][1000 genomes]
rs1723506	0.90[EUR][1000 genomes]
rs1723507	0.90[EUR][1000 genomes]
rs1723508	0.95[EUR][1000 genomes]
rs1723527	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1723528	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1723531	0.92[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1741780	1.00[EUR][1000 genomes]
rs1741782	0.95[EUR][1000 genomes]
rs1741783	1.00[EUR][1000 genomes]
rs1741784	0.95[EUR][1000 genomes]
rs1741786	1.00[EUR][1000 genomes]
rs1741787	1.00[EUR][1000 genomes]
rs1741788	1.00[EUR][1000 genomes]
rs1741789	1.00[EUR][1000 genomes]
rs1741790	1.00[EUR][1000 genomes]
rs1741799	0.95[EUR][1000 genomes]
rs1741802	0.85[EUR][1000 genomes]
rs1741805	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741810	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1779745	0.85[EUR][1000 genomes]
rs1779753	1.00[EUR][1000 genomes]
rs1779755	1.00[EUR][1000 genomes]
rs1779756	1.00[EUR][1000 genomes]
rs1779757	0.92[CHD][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1779758	0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1779760	1.00[EUR][1000 genomes]
rs1857565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1936532	1.00[EUR][1000 genomes]
rs2005098	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2474908	1.00[EUR][1000 genomes]
rs2622277	1.00[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs2622306	0.85[EUR][1000 genomes]
rs2622308	0.85[EUR][1000 genomes]
rs2677021	0.95[EUR][1000 genomes]
rs2677022	1.00[EUR][1000 genomes]
rs2677023	0.92[CHD][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[EUR][1000 genomes]
rs2677024	0.92[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2677026	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2677027	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2677028	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2677029	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2753064	0.85[EUR][1000 genomes]
rs2753065	0.85[EUR][1000 genomes]
rs2753069	1.00[EUR][1000 genomes]
rs2753070	1.00[EUR][1000 genomes]
rs2753071	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2753072	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2753073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753074	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2800019	0.81[EUR][1000 genomes]
rs2800020	0.85[EUR][1000 genomes]
rs2800021	0.85[EUR][1000 genomes]
rs2800024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2800025	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs2800029	0.85[EUR][1000 genomes]
rs2800031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800033	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2800034	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2800035	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2800036	1.00[EUR][1000 genomes]
rs4710426	1.00[EUR][1000 genomes]
rs56212786	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59943612	0.85[EUR][1000 genomes]
rs60505637	0.85[EUR][1000 genomes]
rs61229307	0.85[EUR][1000 genomes]
rs6454169	1.00[EUR][1000 genomes]
rs6933112	1.00[EUR][1000 genomes]
rs732948	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7381742	0.95[EUR][1000 genomes]
rs7382020	1.00[EUR][1000 genomes]
rs7750785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752941	1.00[EUR][1000 genomes]
rs7757686	1.00[EUR][1000 genomes]
rs7758841	1.00[EUR][1000 genomes]
rs7761720	0.90[EUR][1000 genomes]
rs7767012	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7771677	1.00[EUR][1000 genomes]
rs7771703	0.90[EUR][1000 genomes]
rs824372	0.85[MEX][hapmap]
rs824373	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs824374	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs824375	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs824376	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs824377	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs824378	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs824379	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs824380	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824381	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs824383	1.00[EUR][1000 genomes]
rs824385	1.00[EUR][1000 genomes]
rs824387	1.00[EUR][1000 genomes]
rs824388	0.85[EUR][1000 genomes]
rs824390	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824394	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs850830	0.81[AMR][1000 genomes]
rs860349	1.00[EUR][1000 genomes]
rs861113	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs865415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs865416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs940741	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9767041	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64120400-64121600	Enhancers	Fetal Intestine Small	intestine
2	chr6:64120400-64121800	Enhancers	Liver	Liver
3	chr6:64120600-64121400	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:64120600-64121400	Flanking Active TSS	HepG2	liver
5	chr6:64120800-64121000	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr6:64120800-64121000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr6:64120800-64121800	Enhancers	Sigmoid Colon	Sigmoid Colon

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