Variant report

Variant	rs140867896
Chromosome Location	chr2:173939922-173939923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr2:173939685-173944195	IMR90	lung:	n/a	chr2:173940491-173940501 chr2:173940771-173940781 chr2:173940428-173940438 chr2:173940352-173940362
2	POLR2A	chr2:173939908-173942230	PANC-1	pancreas:	n/a	n/a
3	TEAD4	chr2:173939907-173940258	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr2:173939730-173945222	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr2:173937409-173945617	MCF10A-Er-Src	breast:	n/a	n/a
6	ZNF263	chr2:173939768-173941499	HEK293-T-REx	kidney:	n/a	n/a
7	MXI1	chr2:173939609-173943667	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr2:173939601-173942224	PANC-1	pancreas:	n/a	n/a
9	RAD21	chr2:173939842-173942107	SK-N-SH	brain:	n/a	chr2:173940860-173940873
10	POLR2A	chr2:173939866-173940415	K562	blood:	n/a	n/a
11	CTCF	chr2:173939595-173941069	A549	lung:	n/a	chr2:173941032-173941045

No.	Distal block	Cell Line	Cell type
1	chr2:173939442..173941828-chr2:174218952..174221644,4	K562	blood:
2	chr2:173939873..173942564-chr2:174828139..174830300,2	K562	blood:
3	chr2:173939516..173941828-chr2:174218952..174221644,5	K562	blood:
4	chr2:173939725..173941702-chr2:174219358..174221001,2	MCF-7	breast:
5	chr2:173939894..173941691-chr2:174070697..174073381,2	K562	blood:
6	chr2:173907898..173920360-chr2:173936226..173946823,30	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091436	TF binding region
ENSG00000172845	Chromatin interaction
ENSG00000238133	Chromatin interaction
ENSG00000144354	Chromatin interaction
ENSG00000091428	Chromatin interaction
ENSG00000236391	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3371931	chr2:173938506-173943004	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv3410281	chr2:173939731-173942579	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173934000-173940000	Weak transcription	Pancreas	Pancrea
2	chr2:173936000-173940000	Weak transcription	Right Atrium	heart
3	chr2:173937800-173940000	Weak transcription	Aorta	Aorta
4	chr2:173938400-173940000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:173938600-173940000	Enhancers	Left Ventricle	heart
6	chr2:173938600-173940000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:173938800-173940000	Weak transcription	Liver	Liver
8	chr2:173938800-173940200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:173938800-173940400	Enhancers	Fetal Heart	heart
10	chr2:173939000-173940000	Weak transcription	Ovary	ovary
11	chr2:173939400-173940000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:173939400-173940000	Enhancers	Colon Smooth Muscle	Colon
13	chr2:173939600-173940000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:173939600-173940000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:173939600-173940000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:173939600-173940000	Enhancers	Brain Hippocampus Middle	brain
17	chr2:173939600-173940000	Enhancers	Right Ventricle	heart
18	chr2:173939600-173940000	Enhancers	Stomach Smooth Muscle	stomach
19	chr2:173939600-173940000	Bivalent Enhancer	HepG2	liver
20	chr2:173939600-173940200	Enhancers	Psoas Muscle	Psoas
21	chr2:173939600-173940200	Enhancers	NHDF-Ad	bronchial
22	chr2:173939600-173940400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr2:173939800-173940000	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:173939800-173940000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:173939800-173940000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr2:173939800-173940000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
27	chr2:173939800-173940000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr2:173939800-173940000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:173939800-173940000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr2:173939800-173940000	Enhancers	Primary hematopoietic stem cells	blood
31	chr2:173939800-173940000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:173939800-173940000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:173939800-173940000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:173939800-173940000	Enhancers	Adipose Nuclei	Adipose
35	chr2:173939800-173940000	Enhancers	Fetal Intestine Large	intestine
36	chr2:173939800-173940000	Enhancers	Fetal Intestine Small	intestine
37	chr2:173939800-173940000	Enhancers	Fetal Muscle Trunk	muscle
38	chr2:173939800-173940000	Enhancers	Fetal Muscle Leg	muscle
39	chr2:173939800-173940000	Enhancers	Fetal Stomach	stomach
40	chr2:173939800-173940000	Enhancers	Fetal Thymus	thymus
41	chr2:173939800-173940000	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr2:173939800-173940000	Enhancers	Thymus	Thymus
43	chr2:173939800-173940000	Enhancers	Hela-S3	cervix
44	chr2:173939800-173940000	Enhancers	HMEC	breast
45	chr2:173939800-173940000	Enhancers	HUVEC	blood vessel
46	chr2:173939800-173940000	Enhancers	K562	blood
47	chr2:173939800-173940000	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr2:173939800-173940000	Enhancers	NHEK	skin
49	chr2:173939800-173940000	Enhancers	Osteobl	bone
50	chr2:173939800-173940200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell

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