Variant report

Variant	rs1409981
Chromosome Location	chr1:71352870-71352871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10889897	0.84[CEU][hapmap]
rs11209709	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11209710	0.82[EUR][1000 genomes]
rs11209711	0.83[CEU][hapmap]
rs12032742	0.95[ASN][1000 genomes]
rs12039590	0.84[CEU][hapmap]
rs12046641	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs1409161	0.83[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1409166	0.81[EUR][1000 genomes]
rs1409989	0.92[ASN][1000 genomes]
rs17541597	0.84[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4650094	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs942977	0.84[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71346000-71357000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:71348200-71354400	Weak transcription	Aorta	Aorta
3	chr1:71352200-71354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:71352400-71355400	Weak transcription	K562	blood
5	chr1:71352600-71354000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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