Variant report

Variant	rs1409983
Chromosome Location	chr1:71245436-71245437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10518349	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12049445	0.85[EUR][1000 genomes]
rs12128044	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72932180	0.89[EUR][1000 genomes]
rs72932181	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3452325	chr1:71243992-71249701	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	esv3452326	chr1:71244085-71249601	Flanking Active TSS Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	esv3452327	chr1:71244085-71249601	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv18463	chr1:71244106-71249573	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv546457	chr1:71245142-71246574	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv546458	chr1:71245142-71246843	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv546459	chr1:71245142-71247531	Flanking Active TSS Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv546460	chr1:71245142-71248283	Flanking Active TSS Enhancers Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	nsv546461	chr1:71245142-71249139	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv546462	chr1:71245142-71249485	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
11	nsv546463	chr1:71245423-71246843	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
12	nsv546464	chr1:71245423-71247822	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
13	nsv546465	chr1:71245423-71249139	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv546466	chr1:71245423-71249485	Flanking Active TSS Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71243000-71247000	Enhancers	NHDF-Ad	bronchial
2	chr1:71244800-71245600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:71244800-71245600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:71244800-71245800	Enhancers	HSMM	muscle
5	chr1:71245200-71246200	Weak transcription	Osteobl	bone
6	chr1:71245400-71246200	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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