Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10443262	0.92[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10889897	0.80[JPT][hapmap]
rs1108801	0.81[ASN][1000 genomes]
rs12033260	0.81[ASN][1000 genomes]
rs12039590	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs12046339	0.81[ASN][1000 genomes]
rs12729410	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1325950	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1327451	0.91[ASN][1000 genomes]
rs1327453	0.90[ASN][1000 genomes]
rs1327460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1536537	0.98[ASN][1000 genomes]
rs1576056	0.92[ASN][1000 genomes]
rs2225025	0.92[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2421783	0.81[ASN][1000 genomes]
rs34384777	0.81[ASN][1000 genomes]
rs4650085	0.81[ASN][1000 genomes]
rs7530345	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7533733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540868	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs871577	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71330800-71343200	Weak transcription	K562	blood
2	chr1:71331400-71334800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:71331600-71337200	Weak transcription	Fetal Heart	heart
4	chr1:71332800-71336600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:71332800-71337000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:71332800-71338800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:71333000-71334400	Enhancers	Primary T cells from cord blood	blood

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