Variant report

Variant	rs1409986
Chromosome Location	chr1:71331498-71331499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1327452	0.85[EUR][1000 genomes]
rs1327462	0.88[EUR][1000 genomes]
rs1409979	0.85[EUR][1000 genomes]
rs1409980	0.84[EUR][1000 genomes]
rs1414069	0.85[CEU][hapmap]
rs1576055	1.00[CEU][hapmap]
rs1591385	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs1854149	0.85[EUR][1000 genomes]
rs2209747	0.85[EUR][1000 genomes]
rs2225110	0.85[EUR][1000 genomes]
rs2257713	0.85[EUR][1000 genomes]
rs2258725	0.87[EUR][1000 genomes]
rs2782785	0.84[EUR][1000 genomes]
rs3120156	0.84[EUR][1000 genomes]
rs3131375	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4650092	1.00[CEU][hapmap]
rs6424405	0.85[CEU][hapmap]
rs6424406	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7515193	0.88[EUR][1000 genomes]
rs7525012	0.87[EUR][1000 genomes]
rs7551638	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71329800-71332800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:71330800-71331600	Enhancers	Fetal Heart	heart
3	chr1:71330800-71343200	Weak transcription	K562	blood
4	chr1:71331000-71331600	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr1:71331000-71332400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:71331400-71331600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:71331400-71332800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:71331400-71334800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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