Variant report

Variant	rs141028506
Chromosome Location	chr20:25666275-25666276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25665917..25666615-chrX:68763514..68764371,2	MCF-7	breast:
2	chr20:25603625..25606406-chr20:25665177..25670447,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NANP-1	chr20:25666203-25666298	NONHSAT079178

Variant related genes	Relation type
ENSG00000170191	Chromatin interaction
ENSG00000213742	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25656600-25667200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr20:25657200-25667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr20:25657200-25674200	Weak transcription	Fetal Heart	heart
4	chr20:25657400-25666600	Weak transcription	Pancreas	Pancrea
5	chr20:25657400-25676200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr20:25657600-25666600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:25657600-25667200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr20:25657600-25672200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr20:25657600-25672600	Weak transcription	Fetal Brain Male	brain
10	chr20:25657600-25676000	Weak transcription	Stomach Mucosa	stomach
11	chr20:25657600-25676200	Weak transcription	Hela-S3	cervix
12	chr20:25657600-25676200	Weak transcription	K562	blood
13	chr20:25657600-25676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr20:25657800-25667000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr20:25657800-25667200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr20:25657800-25676000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr20:25657800-25676200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr20:25657800-25676200	Weak transcription	Colonic Mucosa	Colon
19	chr20:25657800-25676200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr20:25658000-25667200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr20:25658200-25676200	Weak transcription	Fetal Kidney	kidney
22	chr20:25658400-25676200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr20:25658800-25676200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr20:25659000-25676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr20:25659600-25667600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr20:25660600-25676000	Weak transcription	HUVEC	blood vessel
27	chr20:25662200-25672000	Weak transcription	NH-A	brain
28	chr20:25662400-25676000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr20:25662600-25672200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr20:25662800-25672000	Weak transcription	Primary B cells from cord blood	blood
31	chr20:25663800-25676000	Weak transcription	HMEC	breast
32	chr20:25664000-25666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr20:25664000-25667000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr20:25664000-25675600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr20:25664000-25676000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr20:25664000-25676000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr20:25664200-25666600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr20:25664200-25672000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr20:25664200-25675200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr20:25664200-25676000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr20:25665000-25667400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr20:25665200-25666800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr20:25665200-25667000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr20:25665200-25667000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr20:25665200-25667000	Strong transcription	Fetal Lung	lung
46	chr20:25665200-25667200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr20:25665200-25667200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr20:25665200-25667200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr20:25665200-25667600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr20:25665200-25667600	Strong transcription	Adipose Nuclei	Adipose

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