Variant report

Variant	rs1410586
Chromosome Location	chr1:179515894-179515895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10798686	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs12021876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12023357	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12047808	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs12216994	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12216996	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16854186	0.91[CEU][hapmap]
rs1887814	0.80[YRI][hapmap]
rs1928005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2274624	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs3767841	0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs3818587	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs60323829	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73051834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7549026	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522746	chr1:179501365-179518459	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179514000-179518200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:179515400-179516200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:179515400-179516800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:179515400-179517800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:179515600-179516000	Enhancers	Pancreas	Pancrea
7	chr1:179515600-179521800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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