Variant report

Variant	rs1410589
Chromosome Location	chr1:179518260-179518261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:179518237-179518593	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000261250	TF binding region
AXDND1	TF binding region

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10753200	0.90[CEU][hapmap]
rs10913739	0.86[JPT][hapmap]
rs10913752	0.86[JPT][hapmap]
rs10913753	0.86[JPT][hapmap]
rs10913755	0.86[ASN][1000 genomes]
rs10913760	0.86[ASN][1000 genomes]
rs10913761	0.86[ASN][1000 genomes]
rs10913762	0.86[ASN][1000 genomes]
rs10913766	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10913767	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10913768	0.86[ASN][1000 genomes]
rs10913769	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs10913770	0.86[ASN][1000 genomes]
rs10913771	0.86[ASN][1000 genomes]
rs10913809	1.00[ASN][1000 genomes]
rs11577579	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11578241	0.86[ASN][1000 genomes]
rs11582158	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11582255	0.86[ASN][1000 genomes]
rs11582293	0.86[ASN][1000 genomes]
rs11582754	0.86[ASN][1000 genomes]
rs11586744	0.80[ASN][1000 genomes]
rs11801919	0.89[JPT][hapmap]
rs11802624	0.86[ASN][1000 genomes]
rs11802625	0.86[ASN][1000 genomes]
rs11802637	0.86[ASN][1000 genomes]
rs11803938	0.86[JPT][hapmap]
rs11807559	0.89[JPT][hapmap]
rs11811198	0.88[JPT][hapmap]
rs12401957	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12403885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12403933	1.00[JPT][hapmap]
rs12406197	0.94[EUR][1000 genomes]
rs12408443	0.80[ASN][1000 genomes]
rs12409337	0.80[ASN][1000 genomes]
rs12722736	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs12724320	0.89[JPT][hapmap]
rs12724496	0.86[ASN][1000 genomes]
rs12724525	0.82[JPT][hapmap]
rs12724634	0.86[ASN][1000 genomes]
rs12724778	0.86[JPT][hapmap]
rs12724901	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12726506	0.86[JPT][hapmap]
rs12729067	0.86[ASN][1000 genomes]
rs12729775	0.86[ASN][1000 genomes]
rs12729788	0.89[JPT][hapmap]
rs12730056	0.86[JPT][hapmap]
rs12736279	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736545	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12738929	0.86[ASN][1000 genomes]
rs12739116	0.86[ASN][1000 genomes]
rs12741425	0.86[JPT][hapmap]
rs12743018	0.86[JPT][hapmap]
rs12744251	0.86[ASN][1000 genomes]
rs12744949	0.89[JPT][hapmap]
rs12744976	0.86[JPT][hapmap]
rs12746578	0.88[JPT][hapmap]
rs12747626	0.89[JPT][hapmap]
rs12749461	1.00[JPT][hapmap]
rs12750591	0.86[ASN][1000 genomes]
rs12753162	0.89[JPT][hapmap]
rs12753310	0.86[JPT][hapmap]
rs12756624	0.89[JPT][hapmap]
rs12757708	0.89[JPT][hapmap]
rs12757910	0.89[JPT][hapmap]
rs12757935	0.80[ASN][1000 genomes]
rs12758415	0.80[ASN][1000 genomes]
rs12758828	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12760048	0.89[JPT][hapmap]
rs1328597	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328598	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410594	0.86[CEU][hapmap]
rs1576224	0.93[ASN][1000 genomes]
rs1887815	0.89[EUR][1000 genomes]
rs2209919	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34291276	1.00[ASN][1000 genomes]
rs34463289	1.00[ASN][1000 genomes]
rs35401719	1.00[ASN][1000 genomes]
rs35427395	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36057553	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3754133	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3765548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3930537	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs3935240	0.89[JPT][hapmap]
rs4130266	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4233179	0.86[JPT][hapmap]
rs4360491	0.80[ASN][1000 genomes]
rs4418554	0.80[ASN][1000 genomes]
rs4454499	0.86[ASN][1000 genomes]
rs4651028	0.86[ASN][1000 genomes]
rs4651037	0.93[ASN][1000 genomes]
rs4651043	0.86[CEU][hapmap]
rs4652424	0.90[CEU][hapmap]
rs4652426	0.88[EUR][1000 genomes]
rs61821011	0.86[ASN][1000 genomes]
rs61826364	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826365	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826402	0.87[EUR][1000 genomes]
rs6666939	0.88[JPT][hapmap]
rs7513782	0.80[ASN][1000 genomes]
rs7513973	0.80[ASN][1000 genomes]
rs7524128	0.86[JPT][hapmap]
rs7532155	0.86[ASN][1000 genomes]
rs7550638	0.86[JPT][hapmap]
rs7551894	0.80[ASN][1000 genomes]
rs7554103	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7555895	0.88[JPT][hapmap]
rs9662026	0.80[ASN][1000 genomes]
rs9699789	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522746	chr1:179501365-179518459	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv523253	chr1:179516072-179518459	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179515600-179521800	Enhancers	Placenta	Placenta
3	chr1:179516800-179519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:179516800-179520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:179517800-179518600	Enhancers	Gastric	stomach
6	chr1:179518200-179519000	Weak transcription	Pancreas	Pancrea

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