Variant report

Variant	rs1411440
Chromosome Location	chr9:72213951-72213952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10123008	0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746682	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs10780527	0.92[JPT][hapmap]
rs10780528	0.92[JPT][hapmap]
rs10780539	0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs10867825	0.81[JPT][hapmap]
rs10867828	0.84[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs10867830	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11139338	0.92[JPT][hapmap]
rs11139361	0.92[JPT][hapmap]
rs11139511	0.92[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs1330334	0.86[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1330336	0.93[ASN][1000 genomes]
rs1556211	0.93[JPT][hapmap]
rs1854702	0.86[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1854703	0.86[JPT][hapmap]
rs1967880	0.92[JPT][hapmap]
rs1970017	0.92[JPT][hapmap]
rs2026150	0.84[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2161056	0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2309515	0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs4744913	0.93[JPT][hapmap]
rs4744917	0.86[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4744919	0.89[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4744920	0.81[EUR][1000 genomes]
rs6559643	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs7030393	0.86[JPT][hapmap]
rs7031694	0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7853783	0.93[JPT][hapmap]
rs7871895	0.93[JPT][hapmap]
rs869150	0.89[CHB][hapmap]
rs986352	0.83[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs987653	0.92[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72207000-72216600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:72207800-72220200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:72208600-72217400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:72209200-72214600	Weak transcription	Ovary	ovary
5	chr9:72209200-72214600	Weak transcription	Right Ventricle	heart
6	chr9:72209200-72219600	Weak transcription	Gastric	stomach
7	chr9:72209400-72214200	Weak transcription	Fetal Heart	heart
8	chr9:72209400-72214600	Weak transcription	Right Atrium	heart
9	chr9:72209400-72215000	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:72209800-72217600	Weak transcription	Fetal Lung	lung
11	chr9:72212000-72216400	Weak transcription	Dnd41	blood
12	chr9:72212000-72219200	Weak transcription	Liver	Liver

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