Variant report

Variant	rs1411443
Chromosome Location	chr9:72209207-72209208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10746683	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1576509	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082716	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082926	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082946	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4330751	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60787800	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6559648	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73451468	0.93[EUR][1000 genomes]
rs73451486	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72207000-72216600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:72207800-72209400	Enhancers	Fetal Heart	heart
3	chr9:72207800-72220200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:72208200-72209800	Enhancers	Fetal Lung	lung
5	chr9:72208400-72209400	Enhancers	Right Atrium	heart
6	chr9:72208400-72209600	Enhancers	Brain Germinal Matrix	brain
7	chr9:72208600-72217400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:72208800-72209400	Enhancers	Pancreas	Pancrea
9	chr9:72209000-72209400	Enhancers	Liver	Liver
10	chr9:72209000-72209400	Enhancers	Brain Angular Gyrus	brain
11	chr9:72209000-72209400	Enhancers	Fetal Muscle Leg	muscle
12	chr9:72209200-72209400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr9:72209200-72214600	Weak transcription	Ovary	ovary
14	chr9:72209200-72214600	Weak transcription	Right Ventricle	heart
15	chr9:72209200-72219600	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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