Variant report

Variant	rs1412741
Chromosome Location	chr6:12817667-12817668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12815318..12818170-chr6:12823391..12825679,3	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10948235	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10948244	1.00[CHB][hapmap]
rs10948247	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11753864	0.93[ASN][1000 genomes]
rs11758650	0.93[ASN][1000 genomes]
rs12523719	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12524974	0.93[ASN][1000 genomes]
rs12528956	1.00[CHB][hapmap]
rs12530186	0.93[ASN][1000 genomes]
rs13203774	0.86[ASN][1000 genomes]
rs13203883	0.93[ASN][1000 genomes]
rs13214313	0.93[ASN][1000 genomes]
rs13217579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1332840	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1332841	1.00[CHB][hapmap]
rs1360579	1.00[CHB][hapmap]
rs1412738	0.85[ASN][1000 genomes]
rs1412740	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1412744	1.00[CHB][hapmap]
rs1412749	0.93[ASN][1000 genomes]
rs1412751	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1412752	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1412753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1572000	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1572002	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16873383	0.93[ASN][1000 genomes]
rs17617207	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17679417	1.00[CHB][hapmap]
rs17679501	1.00[CHB][hapmap]
rs1953089	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2015764	0.93[ASN][1000 genomes]
rs2095123	0.93[ASN][1000 genomes]
rs2327616	0.93[ASN][1000 genomes]
rs2327617	0.86[ASN][1000 genomes]
rs2327619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28451666	0.93[ASN][1000 genomes]
rs34498965	0.93[ASN][1000 genomes]
rs4711841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711857	1.00[CHB][hapmap]
rs4711858	1.00[CHB][hapmap]
rs4714866	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4714868	0.93[ASN][1000 genomes]
rs4714870	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4714946	1.00[CHB][hapmap]
rs6458460	0.93[ASN][1000 genomes]
rs6458461	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6458473	0.93[ASN][1000 genomes]
rs6458503	1.00[CHB][hapmap]
rs6909834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6913075	0.93[ASN][1000 genomes]
rs6916334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6916397	0.81[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6916418	0.93[ASN][1000 genomes]
rs6916421	0.93[ASN][1000 genomes]
rs6917493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6919327	0.93[ASN][1000 genomes]
rs6922482	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6922969	0.93[ASN][1000 genomes]
rs6924150	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6930873	0.93[ASN][1000 genomes]
rs6935309	0.93[ASN][1000 genomes]
rs6938417	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6941422	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6941624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7747656	0.93[ASN][1000 genomes]
rs7748950	1.00[CHB][hapmap]
rs7757205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7757835	0.93[ASN][1000 genomes]
rs7757858	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7758513	0.93[ASN][1000 genomes]
rs7760140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7760286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7762417	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7762547	0.93[ASN][1000 genomes]
rs7764490	0.93[ASN][1000 genomes]
rs7770745	1.00[CHB][hapmap]
rs7771962	1.00[CHB][hapmap]
rs7776079	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8180628	0.81[MEX][hapmap]
rs883947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9296464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9296465	0.93[ASN][1000 genomes]
rs9296494	1.00[CHB][hapmap]
rs9381391	0.93[ASN][1000 genomes]
rs9395190	1.00[CHB][hapmap]
rs944766	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs944767	1.00[CHB][hapmap]
rs9463106	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9463110	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9463134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9463136	0.93[ASN][1000 genomes]
rs9463137	0.93[ASN][1000 genomes]
rs9463138	0.93[ASN][1000 genomes]
rs9472551	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9472558	0.93[ASN][1000 genomes]
rs9472583	0.86[ASN][1000 genomes]
rs9472587	0.93[ASN][1000 genomes]
rs9472590	0.93[ASN][1000 genomes]
rs9472594	0.93[ASN][1000 genomes]
rs9472595	0.93[ASN][1000 genomes]
rs9472777	1.00[CHB][hapmap]
rs9472786	1.00[CHB][hapmap]
rs950720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12814000-12819000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:12814200-12818600	Weak transcription	HSMMtube	muscle
3	chr6:12814600-12818400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:12814800-12818400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:12815200-12818400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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