Variant report

Variant	rs1412749
Chromosome Location	chr6:12774363-12774364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10948235	1.00[ASN][1000 genomes]
rs10948247	1.00[ASN][1000 genomes]
rs11753864	1.00[ASN][1000 genomes]
rs11758650	1.00[ASN][1000 genomes]
rs12523719	1.00[ASN][1000 genomes]
rs12524974	1.00[ASN][1000 genomes]
rs12530186	1.00[ASN][1000 genomes]
rs13203774	0.93[ASN][1000 genomes]
rs13203883	1.00[ASN][1000 genomes]
rs13214313	1.00[ASN][1000 genomes]
rs13217579	1.00[ASN][1000 genomes]
rs1412738	0.92[ASN][1000 genomes]
rs1412740	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1412741	0.93[ASN][1000 genomes]
rs1412751	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412752	1.00[ASN][1000 genomes]
rs1412753	1.00[ASN][1000 genomes]
rs1572000	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572002	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873383	1.00[ASN][1000 genomes]
rs17617207	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953089	1.00[ASN][1000 genomes]
rs2015764	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026457	0.85[EUR][1000 genomes]
rs2095123	1.00[ASN][1000 genomes]
rs2327616	1.00[ASN][1000 genomes]
rs2327617	0.93[ASN][1000 genomes]
rs2327619	1.00[ASN][1000 genomes]
rs28451666	1.00[ASN][1000 genomes]
rs34498965	1.00[ASN][1000 genomes]
rs4711841	0.93[ASN][1000 genomes]
rs4714866	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714868	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714870	1.00[ASN][1000 genomes]
rs6458460	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458461	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458473	1.00[ASN][1000 genomes]
rs6909834	1.00[ASN][1000 genomes]
rs6913075	1.00[ASN][1000 genomes]
rs6915402	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6916334	1.00[ASN][1000 genomes]
rs6916397	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916421	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917097	0.81[EUR][1000 genomes]
rs6917493	1.00[ASN][1000 genomes]
rs6919327	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922482	0.93[ASN][1000 genomes]
rs6922969	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924150	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930873	1.00[ASN][1000 genomes]
rs6935309	1.00[ASN][1000 genomes]
rs6938417	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941422	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941624	1.00[ASN][1000 genomes]
rs7747656	1.00[ASN][1000 genomes]
rs7757205	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757835	1.00[ASN][1000 genomes]
rs7757858	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758513	1.00[ASN][1000 genomes]
rs7760140	1.00[ASN][1000 genomes]
rs7760286	1.00[ASN][1000 genomes]
rs7762417	1.00[ASN][1000 genomes]
rs7762547	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764490	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776079	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs883947	1.00[ASN][1000 genomes]
rs9296464	1.00[ASN][1000 genomes]
rs9296465	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296487	0.81[EUR][1000 genomes]
rs9349344	0.85[EUR][1000 genomes]
rs9349346	0.85[EUR][1000 genomes]
rs9381391	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395172	0.81[EUR][1000 genomes]
rs944766	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463106	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463110	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463134	1.00[ASN][1000 genomes]
rs9463136	1.00[ASN][1000 genomes]
rs9463137	1.00[ASN][1000 genomes]
rs9463138	1.00[ASN][1000 genomes]
rs9472551	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472558	1.00[ASN][1000 genomes]
rs9472583	0.93[ASN][1000 genomes]
rs9472587	1.00[ASN][1000 genomes]
rs9472590	1.00[ASN][1000 genomes]
rs9472594	1.00[ASN][1000 genomes]
rs9472595	1.00[ASN][1000 genomes]
rs950720	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12762200-12780600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:12770600-12775000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:12770600-12775800	Weak transcription	HSMMtube	muscle
4	chr6:12770800-12776200	Weak transcription	HSMM	muscle
5	chr6:12773800-12780400	Weak transcription	Fetal Brain Female	brain
6	chr6:12774000-12780400	Weak transcription	Fetal Brain Male	brain

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