Variant report

Variant	rs1413396
Chromosome Location	chr10:25641990-25641991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10764548	0.85[CHD][hapmap]
rs10828776	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs1329258	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs1329268	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs1334057	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs1341967	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs1410935	0.89[CHB][hapmap]
rs1413398	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs1576319	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs1612726	0.85[CHD][hapmap]
rs1754248	0.85[CHD][hapmap]
rs1754252	0.91[EUR][1000 genomes]
rs1754259	0.90[EUR][1000 genomes]
rs1754281	0.85[CHD][hapmap]
rs1760750	0.92[CEU][hapmap]
rs1760757	0.83[CEU][hapmap]
rs1773615	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs1773624	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs1773631	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs1773652	0.84[EUR][1000 genomes]
rs1773654	0.87[CHD][hapmap];0.92[GIH][hapmap]
rs1773658	0.85[CHD][hapmap]
rs1773678	0.82[CHD][hapmap]
rs1773681	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs1773682	0.85[CHD][hapmap]
rs1812401	0.83[CEU][hapmap]
rs1854471	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs1855462	0.92[CEU][hapmap]
rs4405201	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs4749022	0.85[CHD][hapmap]
rs545905	0.84[CEU][hapmap]
rs564371	0.92[CEU][hapmap]
rs577382	0.92[CEU][hapmap]
rs7072189	0.84[EUR][1000 genomes]
rs7392687	0.85[CHD][hapmap]
rs768540	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs7924230	0.89[CHB][hapmap]
rs824591	0.83[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap]
rs824596	0.87[EUR][1000 genomes]
rs824601	0.92[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs824602	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs824604	0.84[EUR][1000 genomes]
rs844042	0.92[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs956085	0.84[CHD][hapmap]
rs956086	0.84[CHD][hapmap]
rs956088	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs961027	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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