Variant report

Variant	rs1413965
Chromosome Location	chr6:102491857-102491858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1335029	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1335031	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1335032	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1335033	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2023599	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2518146	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs2518148	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2518150	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2782916	0.95[CEU][hapmap]
rs2782917	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2782920	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs2782922	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2782929	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs2852608	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2852610	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap]
rs2852611	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2852612	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs995639	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs995640	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1022069	chr6:102470600-102598244	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529294	chr6:102474505-103122745	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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