The 2.0 version of rSNPBase

Variant report

Variant rs1415984
Chromosome Location chr1:67002117-67002118
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:66998400-67003200 Active TSS Aorta Aorta
2 chr1:66998600-67002400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr1:66998800-67002200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr1:66998800-67002200 Active TSS Brain Angular Gyrus brain
5 chr1:66998800-67002200 Active TSS Brain Inferior Temporal Lobe brain
6 chr1:66998800-67002200 Active TSS Fetal Brain Male brain
7 chr1:66998800-67002600 Active TSS NHDF-Ad bronchial
8 chr1:66998800-67002800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
9 chr1:66998800-67003400 Active TSS NHLF lung
10 chr1:66999000-67002600 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:66999000-67003600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:67000000-67004800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:67000000-67005000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:67000000-67005400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr1:67000200-67006400 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:67000400-67003000 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr1:67000400-67005000 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr1:67000400-67005200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:67000400-67008000 Weak transcription Lung lung
20 chr1:67000400-67022000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr1:67000800-67002200 Flanking Active TSS HUVEC blood vessel
22 chr1:67000800-67029800 Weak transcription Primary hematopoietic stem cells blood
23 chr1:67001000-67002600 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:67001000-67006200 Weak transcription HepG2 liver
25 chr1:67001000-67008000 Weak transcription Left Ventricle heart
26 chr1:67001200-67002800 Active TSS NH-A brain
27 chr1:67001200-67022000 Weak transcription Right Ventricle heart
28 chr1:67001400-67003000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:67001400-67005400 Weak transcription Fetal Lung lung
30 chr1:67001600-67002600 Enhancers Liver Liver
31 chr1:67001600-67002600 Flanking Active TSS Fetal Heart heart
32 chr1:67001600-67011000 Weak transcription Stomach Smooth Muscle stomach
33 chr1:67001800-67002200 Flanking Active TSS Muscle Satellite Cultured Cells --
34 chr1:67001800-67002200 Flanking Active TSS Brain Anterior Caudate brain
35 chr1:67001800-67002600 Flanking Active TSS Brain Hippocampus Middle brain
36 chr1:67001800-67002800 Flanking Active TSS Brain Cingulate Gyrus brain
37 chr1:67001800-67003400 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:67001800-67006000 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr1:67002000-67002200 Enhancers Osteobl bone
40 chr1:67002000-67002400 Flanking Active TSS Fetal Brain Female brain
41 chr1:67002000-67002800 Enhancers Brain Substantia Nigra brain
42 chr1:67002000-67002800 Enhancers Duodenum Smooth Muscle Duodenum
43 chr1:67002000-67003000 Active TSS Brain Germinal Matrix brain
44 chr1:67002000-67005600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:67002000-67010600 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015