Variant report

Variant	rs1416481
Chromosome Location	chr6:150721430-150721431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150720777..150722938-chr6:150732800..150734541,2	MCF-7	breast:
2	chr6:150717285..150719589-chr6:150720584..150722449,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11962096	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11969964	1.00[CEU][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.93[MEX][hapmap]
rs12208588	0.96[GIH][hapmap]
rs12530375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1339110	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1556881	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2076284	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap]
rs2076285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2076286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2076287	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2076288	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2076289	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2076290	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2076291	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2076292	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734734	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3823259	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3823260	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4407723	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5029121	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs60702386	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62432483	0.88[AMR][1000 genomes]
rs62432484	0.88[AMR][1000 genomes]
rs62432506	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62432511	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62432540	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62432541	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62432542	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs660382	0.80[JPT][hapmap]
rs683255	0.80[JPT][hapmap]
rs6909655	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911086	0.84[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6921360	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73617698	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7745569	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7761373	0.80[JPT][hapmap]
rs7761906	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7762616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7763368	0.96[GIH][hapmap]
rs7768510	0.96[GIH][hapmap]
rs7769542	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7770389	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7774077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7774404	0.87[ASN][1000 genomes]
rs9322259	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9371429	0.88[AMR][1000 genomes]
rs9371437	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9372012	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9383808	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9384445	1.00[CEU][hapmap]
rs9384472	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384473	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384474	0.84[ASN][1000 genomes]
rs9384476	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9397292	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap]
rs9397302	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9397303	0.94[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9397944	1.00[CEU][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9397954	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464078	chr6:150720439-150729878	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv604849	chr6:150720439-150729878	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150718200-150721800	Strong transcription	Liver	Liver
2	chr6:150719600-150723800	Weak transcription	Fetal Heart	heart
3	chr6:150720600-150723000	Weak transcription	Fetal Intestine Small	intestine

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