Variant report

Variant	rs1416617
Chromosome Location	chr1:216910472-216910473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216901271..216903565-chr1:216909673..216911332,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10495034	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11117665	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11572659	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11572663	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11572717	1.00[JPT][hapmap]
rs11572754	1.00[JPT][hapmap]
rs11572785	1.00[JPT][hapmap]
rs12066669	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12071565	1.00[CEU][hapmap]
rs12077706	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12089589	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12090836	0.96[EUR][1000 genomes]
rs12095206	0.96[EUR][1000 genomes]
rs13375077	1.00[JPT][hapmap]
rs1339351	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1339357	1.00[JPT][hapmap]
rs1361333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361334	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1416616	1.00[JPT][hapmap]
rs1416618	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17043116	1.00[JPT][hapmap]
rs17043683	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs17629008	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs17679570	0.82[MEX][hapmap];1.00[TSI][hapmap]
rs17680160	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17680188	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17680284	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17680350	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2789729	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2813696	1.00[JPT][hapmap]
rs2813697	1.00[JPT][hapmap]
rs2813701	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2813708	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2813709	1.00[JPT][hapmap]
rs6661678	1.00[JPT][hapmap]
rs6693114	1.00[JPT][hapmap]
rs6699811	1.00[JPT][hapmap]
rs6700565	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216905200-216913200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:216907400-216913400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:216910000-216911600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:216910400-216911800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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