Variant report

Variant	rs1417976
Chromosome Location	chr9:15801807-15801808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10429512	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10732334	1.00[YRI][hapmap]
rs10756706	0.83[AMR][1000 genomes]
rs10810445	1.00[YRI][hapmap]
rs10810447	1.00[YRI][hapmap]
rs1081244	1.00[ASN][1000 genomes]
rs1081246	1.00[ASN][1000 genomes]
rs1081247	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1341739	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1361608	1.00[ASN][1000 genomes]
rs1572977	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578556	1.00[ASN][1000 genomes]
rs16933738	0.84[EUR][1000 genomes]
rs1773046	1.00[ASN][1000 genomes]
rs1832818	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096119	1.00[YRI][hapmap]
rs2105320	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153724	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185664	1.00[YRI][hapmap]
rs2382536	1.00[YRI][hapmap]
rs276437	0.89[YRI][hapmap]
rs4146288	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146289	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146292	1.00[YRI][hapmap]
rs4741540	0.84[AFR][1000 genomes]
rs4741544	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474973	1.00[YRI][hapmap]
rs6474976	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474977	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474978	1.00[ASN][1000 genomes]
rs6474979	1.00[ASN][1000 genomes]
rs7027040	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7468716	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs770190	1.00[ASN][1000 genomes]
rs770193	1.00[ASN][1000 genomes]
rs770195	1.00[ASN][1000 genomes]
rs770196	1.00[ASN][1000 genomes]
rs770197	1.00[ASN][1000 genomes]
rs770203	0.90[YRI][hapmap]
rs770206	0.90[YRI][hapmap]
rs7852250	1.00[CEU][hapmap]
rs7860463	1.00[ASN][1000 genomes]
rs7865141	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865391	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7874094	1.00[YRI][hapmap]
rs9406543	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9406544	1.00[ASN][1000 genomes]
rs9406546	1.00[ASN][1000 genomes]
rs954932	1.00[YRI][hapmap]
rs955193	1.00[YRI][hapmap]
rs9919009	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613660	chr9:15794897-15817119	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
2	chr9:15783600-15802000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15785000-15808600	Weak transcription	Aorta	Aorta
4	chr9:15801400-15803000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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