Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126424654..126426414-chr7:126428939..126431035,2	K562	blood:
2	7:126085913-126088095..7:126429477-126435211	GM12878	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10229548	1.00[CHB][hapmap]
rs10238240	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243157	1.00[CHB][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246394	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252394	1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267279	1.00[CHB][hapmap]
rs10267858	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155655	1.00[CHB][hapmap]
rs1204570	1.00[CHB][hapmap]
rs1204582	1.00[CHB][hapmap]
rs13438541	1.00[ASN][1000 genomes]
rs13438547	1.00[ASN][1000 genomes]
rs2106191	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28536013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538335	1.00[ASN][1000 genomes]
rs61755405	1.00[EUR][1000 genomes]
rs6946530	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449067	1.00[EUR][1000 genomes]
rs73449077	1.00[EUR][1000 genomes]
rs73449083	1.00[EUR][1000 genomes]
rs73449094	1.00[EUR][1000 genomes]
rs73449095	1.00[EUR][1000 genomes]
rs916614	1.00[CHB][hapmap]
rs971789	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs974441	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs994783	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032612	chr7:126417533-126456282	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126429200-126431400	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:126429400-126431400	Weak transcription	Brain Substantia Nigra	brain
3	chr7:126429600-126430800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:126429800-126431400	Weak transcription	Brain Cingulate Gyrus	brain

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