Variant report

Variant	rs142043901
Chromosome Location	chr3:142764453-142764454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142760427..142762094-chr3:142762981..142765806,2	K562	blood:
2	chr3:142764453..142766415-chr3:142770589..142773461,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv513081	chr3:142764339-142767045	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142728600-142769000	Weak transcription	Pancreas	Pancrea
2	chr3:142729200-142765000	Strong transcription	Dnd41	blood
3	chr3:142729200-142785200	Weak transcription	Aorta	Aorta
4	chr3:142729400-142764800	Strong transcription	K562	blood
5	chr3:142729800-142764800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:142729800-142765000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:142730200-142765000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:142730200-142765000	Strong transcription	Fetal Thymus	thymus
9	chr3:142732800-142765000	Strong transcription	HSMM	muscle
10	chr3:142734400-142785200	Weak transcription	Esophagus	oesophagus
11	chr3:142740000-142769200	Weak transcription	Gastric	stomach
12	chr3:142742400-142764800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:142749000-142784200	Weak transcription	Small Intestine	intestine
14	chr3:142749200-142765000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:142749200-142769000	Weak transcription	Right Ventricle	heart
16	chr3:142749200-142779000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:142754200-142769800	Weak transcription	Colonic Mucosa	Colon
18	chr3:142755200-142764800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:142755400-142764800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:142755800-142765000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr3:142755800-142765000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:142755800-142765000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr3:142756000-142774400	Weak transcription	Stomach Mucosa	stomach
24	chr3:142756200-142769200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:142759800-142765000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:142760000-142765000	Strong transcription	Hela-S3	cervix
27	chr3:142760600-142764600	Strong transcription	A549	lung
28	chr3:142760600-142764800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:142760600-142764800	Strong transcription	Primary T cells from cord blood	blood
30	chr3:142760600-142764800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr3:142760600-142764800	Strong transcription	HMEC	breast
32	chr3:142760600-142765000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:142760800-142764800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr3:142760800-142764800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr3:142760800-142764800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:142760800-142764800	Strong transcription	Adipose Nuclei	Adipose
37	chr3:142760800-142764800	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:142760800-142765000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:142760800-142765000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:142760800-142765000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr3:142760800-142765600	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr3:142761000-142764800	Strong transcription	Fetal Intestine Large	intestine
43	chr3:142761000-142765000	Strong transcription	Placenta	Placenta
44	chr3:142761200-142764800	Strong transcription	Primary B cells from cord blood	blood
45	chr3:142761400-142764800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
46	chr3:142761400-142764800	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr3:142761400-142764800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:142761400-142764800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:142761400-142764800	Strong transcription	HepG2	liver
50	chr3:142761400-142765000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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