Variant report
| Variant | rs1420516 |
|---|---|
| Chromosome Location | chr3:34784136-34784137 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1345384 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1420513 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1420515 | 0.94[EUR][1000 genomes] |
| rs1420517 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1520634 | 0.86[AMR][1000 genomes] |
| rs1520646 | 0.86[AMR][1000 genomes] |
| rs1520647 | 0.86[AMR][1000 genomes] |
| rs1581334 | 0.86[AMR][1000 genomes] |
| rs1582351 | 0.81[AMR][1000 genomes] |
| rs1894935 | 0.86[AMR][1000 genomes] |
| rs2160468 | 0.86[AMR][1000 genomes] |
| rs2541211 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2541217 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2633355 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2884476 | 0.86[AMR][1000 genomes] |
| rs4678701 | 0.86[AMR][1000 genomes] |
| rs6550287 | 0.81[AMR][1000 genomes] |
| rs6550289 | 0.86[AMR][1000 genomes] |
| rs6550292 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6799184 | 0.81[AMR][1000 genomes] |
| rs7624722 | 0.81[AMR][1000 genomes] |
| rs7625714 | 0.81[AMR][1000 genomes] |
| rs7625770 | 0.81[AMR][1000 genomes] |
| rs9868388 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997333 | chr3:34734012-34795588 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1014239 | chr3:34734012-34806671 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834654 | chr3:34747802-34916657 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv834655 | chr3:34752929-34898824 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34783800-34784600 | Enhancers | Fetal Muscle Leg | muscle |
