Variant report

Variant	rs142074644
Chromosome Location	chr5:118465903-118465904
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118465720..118469192-chr5:118469871..118473875,5	K562	blood:

Variant related genes	Relation type
ENSG00000172869	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882774	chr5:118325429-118553470	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118409000-118471200	Weak transcription	Gastric	stomach
2	chr5:118412200-118522800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:118414400-118472200	Weak transcription	Pancreas	Pancrea
4	chr5:118415400-118471600	Weak transcription	Right Ventricle	heart
5	chr5:118430200-118471400	Weak transcription	Colonic Mucosa	Colon
6	chr5:118430800-118472200	Weak transcription	Esophagus	oesophagus
7	chr5:118431000-118472200	Weak transcription	Small Intestine	intestine
8	chr5:118433000-118466800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:118433000-118468600	Weak transcription	Fetal Heart	heart
10	chr5:118434200-118471000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:118438600-118484400	Weak transcription	NHLF	lung
12	chr5:118442200-118472200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:118443200-118472200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:118444000-118472000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:118444800-118471200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:118445600-118467200	Weak transcription	A549	lung
17	chr5:118447400-118485400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:118448800-118471600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:118450400-118496800	Weak transcription	Stomach Mucosa	stomach
20	chr5:118451200-118533400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:118452600-118468800	Weak transcription	NHDF-Ad	bronchial
22	chr5:118452800-118472400	Weak transcription	Hela-S3	cervix
23	chr5:118453000-118472400	Weak transcription	Psoas Muscle	Psoas
24	chr5:118453600-118471200	Weak transcription	Aorta	Aorta
25	chr5:118453800-118522800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:118454200-118468800	Weak transcription	Osteobl	bone
27	chr5:118456200-118468600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr5:118456800-118469200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:118456800-118483200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:118456800-118484600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr5:118457000-118468600	Weak transcription	Ovary	ovary
32	chr5:118457000-118468600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr5:118457000-118468600	Weak transcription	Thymus	Thymus
34	chr5:118457000-118471200	Weak transcription	Lung	lung
35	chr5:118457000-118472200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr5:118457000-118472200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:118458800-118470600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr5:118459200-118468600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr5:118459400-118471000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr5:118459600-118468400	Weak transcription	Brain Germinal Matrix	brain
41	chr5:118459600-118471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:118459600-118471200	Weak transcription	Spleen	Spleen
43	chr5:118460200-118468800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:118460200-118469200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr5:118460800-118471000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr5:118461400-118466000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:118461600-118470600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:118462200-118466000	Strong transcription	Primary T cells from cord blood	blood
49	chr5:118462800-118470800	Strong transcription	Dnd41	blood
50	chr5:118463000-118467200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links