Variant report

Variant	rs142333808
Chromosome Location	chr4:87677394-87677395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv528327	chr4:87677257-87679642	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87631200-87712200	Weak transcription	Aorta	Aorta
2	chr4:87635200-87737400	Weak transcription	Fetal Brain Male	brain
3	chr4:87636400-87683800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:87639200-87688000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:87639400-87739200	Weak transcription	A549	lung
6	chr4:87641800-87683400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:87642200-87692600	Weak transcription	NH-A	brain
8	chr4:87642400-87735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:87642600-87692400	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:87642600-87697600	Weak transcription	Brain Angular Gyrus	brain
11	chr4:87642600-87719200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:87644600-87680600	Weak transcription	NHLF	lung
13	chr4:87650400-87677400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:87655600-87704400	Weak transcription	Hela-S3	cervix
15	chr4:87661600-87680400	Weak transcription	Brain Substantia Nigra	brain
16	chr4:87661600-87680600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:87661600-87683200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:87661600-87710200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:87661600-87711400	Weak transcription	Brain Germinal Matrix	brain
20	chr4:87661600-87712000	Weak transcription	Esophagus	oesophagus
21	chr4:87661600-87737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:87661800-87683000	Weak transcription	Fetal Stomach	stomach
23	chr4:87661800-87683200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:87661800-87683800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:87661800-87708000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:87661800-87712000	Weak transcription	Fetal Intestine Small	intestine
27	chr4:87661800-87728800	Weak transcription	Pancreas	Pancrea
28	chr4:87663000-87683600	Weak transcription	Fetal Brain Female	brain
29	chr4:87663000-87711400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:87665000-87692400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:87668000-87679400	Weak transcription	Osteobl	bone
32	chr4:87669200-87690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr4:87671800-87713000	Weak transcription	HSMMtube	muscle
34	chr4:87672000-87683600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:87672000-87689000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:87672000-87712200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:87672200-87683600	Weak transcription	Fetal Kidney	kidney
38	chr4:87672600-87683600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr4:87672600-87683800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:87672800-87679800	Weak transcription	Adipose Nuclei	Adipose
41	chr4:87672800-87679800	Weak transcription	Brain Anterior Caudate	brain
42	chr4:87672800-87680600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:87672800-87683000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:87672800-87690600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:87672800-87710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr4:87672800-87712000	Weak transcription	Lung	lung
47	chr4:87673000-87678600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:87673000-87683200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:87673000-87687400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:87673200-87680000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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