Variant report

Variant	rs1424372
Chromosome Location	chr7:137414396-137414397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137413424..137414962-chr7:137421810..137423617,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10215980	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10234581	0.92[CEU][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs1025085	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1025087	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11521066	0.88[CEU][hapmap]
rs11974351	0.84[CEU][hapmap]
rs11976084	0.88[CEU][hapmap]
rs12056089	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12707367	0.81[CHB][hapmap]
rs13234743	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13235392	0.88[CEU][hapmap]
rs1345918	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1364396	0.84[CEU][hapmap]
rs1424370	0.81[CHB][hapmap]
rs1424371	0.86[YRI][hapmap]
rs1991084	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2113428	0.85[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs33916081	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34025316	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3778803	0.88[CEU][hapmap]
rs3800636	0.92[CEU][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3800637	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3800644	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3800645	0.88[CEU][hapmap]
rs3800649	0.84[CEU][hapmap]
rs3800653	0.87[CEU][hapmap]
rs4732263	0.81[CHB][hapmap]
rs4732264	0.81[CHB][hapmap]
rs6944527	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6947142	0.88[CEU][hapmap]
rs6957797	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6971978	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7795441	0.88[CEU][hapmap]
rs7802342	0.88[CEU][hapmap]
rs7806658	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7806810	0.81[CHB][hapmap]
rs9784934	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137403200-137416200	Weak transcription	HSMMtube	muscle
2	chr7:137403400-137416000	Weak transcription	HSMM	muscle
3	chr7:137403800-137415800	Weak transcription	Osteobl	bone
4	chr7:137408200-137415800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:137411000-137424800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:137413400-137415400	Weak transcription	NHDF-Ad	bronchial
7	chr7:137413400-137432200	Weak transcription	Aorta	Aorta
8	chr7:137413600-137415600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:137413600-137416000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:137414200-137415400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:137414200-137419600	Enhancers	Muscle Satellite Cultured Cells	--

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