Variant report

Variant	rs1425445
Chromosome Location	chr4:141913283-141913284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1003257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932554	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12019258	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13129199	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1364881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17340802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17343501	0.87[CEU][hapmap]
rs17425151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895762	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1899424	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs3851424	0.93[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3851425	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4245936	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4956518	1.00[CHB][hapmap]
rs56288735	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59074378	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60293572	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62325721	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325722	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325723	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326020	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326022	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62326024	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6537024	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823670	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73849462	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73849490	0.85[ASN][1000 genomes]
rs7665647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7690780	0.87[CEU][hapmap]
rs7692524	0.87[CEU][hapmap]
rs9994743	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141877800-141913600	Weak transcription	Right Ventricle	heart
2	chr4:141888200-141913400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:141906000-141914600	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:141906200-141913600	Weak transcription	Fetal Stomach	stomach
5	chr4:141908000-141915400	Weak transcription	Psoas Muscle	Psoas
6	chr4:141908200-141914000	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:141910600-141913600	Weak transcription	Left Ventricle	heart
8	chr4:141910600-141919600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:141911000-141923600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:141911200-141913600	Weak transcription	Fetal Heart	heart
11	chr4:141911200-141913800	Weak transcription	Right Atrium	heart
12	chr4:141911400-141914400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:141911400-141914600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:141911800-141915000	Weak transcription	Aorta	Aorta
15	chr4:141911800-141915800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:141911800-141916200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:141912600-141915000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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