Variant report

Variant	rs1425619
Chromosome Location	chr4:129654251-129654252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10002938	0.91[EUR][1000 genomes]
rs10006675	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12506981	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12509201	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13115151	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13128507	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1364968	1.00[CEU][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1991237	0.95[ASN][1000 genomes]
rs2391327	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28453786	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4282195	0.88[EUR][1000 genomes]
rs4450950	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4975246	0.84[ASN][1000 genomes]
rs57872653	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6811857	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7692380	0.95[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129633000-129689600	Weak transcription	Right Atrium	heart
2	chr4:129647000-129658200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:129647400-129654600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:129649400-129658000	Weak transcription	Fetal Heart	heart
5	chr4:129653600-129654600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:129653800-129658200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:129654000-129658200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:129654000-129658400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:129654200-129654600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:129654200-129658000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:129654200-129658000	Weak transcription	K562	blood
12	chr4:129654200-129658200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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