Variant report

Variant	rs142697641
Chromosome Location	chr14:32560979-32560980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32554925..32557855-chr14:32558604..32561592,5	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv974322	chr14:32560175-32563287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32547600-32571400	Weak transcription	Spleen	Spleen
2	chr14:32548000-32586200	Weak transcription	Lung	lung
3	chr14:32548000-32597400	Weak transcription	Esophagus	oesophagus
4	chr14:32548400-32569600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:32548400-32571200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:32548600-32562000	Weak transcription	HUVEC	blood vessel
7	chr14:32548600-32564600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:32548600-32584000	Weak transcription	Fetal Stomach	stomach
9	chr14:32548800-32562000	Weak transcription	Fetal Brain Female	brain
10	chr14:32548800-32570600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr14:32548800-32571600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:32548800-32572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:32549000-32574000	Weak transcription	Aorta	Aorta
14	chr14:32549200-32570800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:32549200-32571600	Weak transcription	K562	blood
16	chr14:32550200-32563600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:32551000-32574000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:32552000-32573600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:32552000-32596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:32552200-32561400	Weak transcription	Brain Germinal Matrix	brain
21	chr14:32552200-32562000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:32553200-32567600	Weak transcription	Right Ventricle	heart
23	chr14:32554200-32562000	Weak transcription	Left Ventricle	heart
24	chr14:32554600-32597200	Weak transcription	Gastric	stomach
25	chr14:32555000-32579600	Weak transcription	NHLF	lung
26	chr14:32555600-32564600	Weak transcription	Fetal Intestine Small	intestine
27	chr14:32555600-32570800	Weak transcription	GM12878-XiMat	blood
28	chr14:32555600-32571400	Weak transcription	Small Intestine	intestine
29	chr14:32555600-32573600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:32555800-32570400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:32556400-32561200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:32557200-32561600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:32557200-32564600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:32557200-32570200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr14:32557400-32561000	Weak transcription	Brain Anterior Caudate	brain
36	chr14:32557400-32561400	Weak transcription	Hela-S3	cervix
37	chr14:32557400-32562400	Weak transcription	Fetal Heart	heart
38	chr14:32557400-32573400	Weak transcription	Stomach Mucosa	stomach
39	chr14:32557600-32561400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:32557600-32563400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr14:32557800-32571400	Weak transcription	Thymus	Thymus
42	chr14:32557800-32571600	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:32558800-32561200	Enhancers	Brain Hippocampus Middle	brain
44	chr14:32558800-32563600	Strong transcription	A549	lung
45	chr14:32559000-32562000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:32559200-32562600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:32559200-32563800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr14:32559200-32564200	Strong transcription	Dnd41	blood
49	chr14:32559200-32564800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:32559200-32570200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links