Variant report

Variant	rs142966768
Chromosome Location	chr15:78928022-78928023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78927929..78930646-chr15:78932577..78935349,2	K562	blood:
2	chr15:78919661..78922424-chr15:78925246..78928766,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117971	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv570202	chr15:78915245-78953785	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2750481	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2750484	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2750494	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2750498	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2750510	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2750511	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv2750521	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv2750525	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv2750528	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv2750531	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2750532	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv2750534	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv2750542	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv2750543	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv2750547	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv2750577	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv2750581	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv2750601	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	esv2750634	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv2750635	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv2750661	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv2750662	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv2750663	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv2750673	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv2750693	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv2750713	chr15:78927945-78929916	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv2750716	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv2750732	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv2750755	chr15:78927945-78929916	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78915000-78929600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:78918600-78933000	Weak transcription	Fetal Kidney	kidney
3	chr15:78918800-78932600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:78922000-78929800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78927400-78932200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:78927600-78928200	Enhancers	Thymus	Thymus
7	chr15:78928000-78928200	Enhancers	Fetal Thymus	thymus

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