Variant report

Variant	rs1430203
Chromosome Location	chr2:56072509-56072510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56066504..56070179-chr2:56070783..56074906,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11125607	0.93[ASN][1000 genomes]
rs11125608	0.90[ASN][1000 genomes]
rs12478566	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1344732	0.88[ASN][1000 genomes]
rs1346781	0.85[ASN][1000 genomes]
rs1346783	0.86[ASN][1000 genomes]
rs1346787	0.93[ASN][1000 genomes]
rs1346790	0.93[ASN][1000 genomes]
rs1367225	0.88[ASN][1000 genomes]
rs1367226	0.93[ASN][1000 genomes]
rs1367228	0.86[ASN][1000 genomes]
rs1430189	0.85[ASN][1000 genomes]
rs1430190	0.88[ASN][1000 genomes]
rs1430191	0.83[ASN][1000 genomes]
rs1897114	0.93[ASN][1000 genomes]
rs1960050	0.91[ASN][1000 genomes]
rs1985160	0.88[ASN][1000 genomes]
rs1985162	0.88[ASN][1000 genomes]
rs2052933	0.85[ASN][1000 genomes]
rs2115876	0.90[ASN][1000 genomes]
rs2115878	0.86[ASN][1000 genomes]
rs3791676	0.90[ASN][1000 genomes]
rs4352264	0.95[ASN][1000 genomes]
rs4672074	0.86[ASN][1000 genomes]
rs4672075	0.80[ASN][1000 genomes]
rs6545523	0.83[ASN][1000 genomes]
rs6545526	0.90[ASN][1000 genomes]
rs6545527	0.93[ASN][1000 genomes]
rs6708796	0.90[ASN][1000 genomes]
rs6712017	0.85[ASN][1000 genomes]
rs6714513	0.85[ASN][1000 genomes]
rs6733730	0.90[ASN][1000 genomes]
rs6743114	0.93[ASN][1000 genomes]
rs6749785	0.83[ASN][1000 genomes]
rs6751403	0.91[ASN][1000 genomes]
rs6753814	0.85[ASN][1000 genomes]
rs6757057	0.85[ASN][1000 genomes]
rs732132	0.83[ASN][1000 genomes]
rs7426380	0.91[ASN][1000 genomes]
rs7572523	0.90[ASN][1000 genomes]
rs7574127	0.85[ASN][1000 genomes]
rs7607070	0.91[ASN][1000 genomes]
rs7609520	0.90[ASN][1000 genomes]
rs934278	0.93[ASN][1000 genomes]
rs9753383	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56066800-56082600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:56070200-56073000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:56070600-56073000	Weak transcription	Pancreas	Pancrea
4	chr2:56070600-56075400	Weak transcription	HUVEC	blood vessel
5	chr2:56070600-56078400	Weak transcription	Ovary	ovary
6	chr2:56071400-56084000	Weak transcription	HSMM	muscle
7	chr2:56071600-56075200	Weak transcription	NHLF	lung
8	chr2:56071600-56075400	Weak transcription	Stomach Mucosa	stomach
9	chr2:56071600-56077200	Weak transcription	Hela-S3	cervix
10	chr2:56071600-56082600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:56071600-56082600	Weak transcription	NHEK	skin
12	chr2:56071600-56086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:56071800-56084000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:56072000-56073200	Enhancers	Adipose Nuclei	Adipose
15	chr2:56072000-56075400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:56072000-56082800	Weak transcription	Osteobl	bone
17	chr2:56072400-56073200	Weak transcription	A549	lung

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