Variant report

Variant	rs143148663
Chromosome Location	chr4:7842143-7842144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7833636..7836409-chr4:7840548..7842854,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7821200-7859000	Weak transcription	Aorta	Aorta
2	chr4:7825600-7852200	Weak transcription	Gastric	stomach
3	chr4:7825800-7854200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:7826000-7846000	Weak transcription	Stomach Mucosa	stomach
5	chr4:7826600-7842400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:7830400-7844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:7830400-7850000	Weak transcription	Right Ventricle	heart
8	chr4:7830400-7862600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:7830600-7842800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:7830600-7842800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:7830600-7843000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:7830600-7844200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:7830600-7844200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:7830600-7844600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:7830600-7845200	Weak transcription	Colonic Mucosa	Colon
16	chr4:7830600-7845800	Weak transcription	Brain Anterior Caudate	brain
17	chr4:7830600-7846400	Weak transcription	Brain Substantia Nigra	brain
18	chr4:7830600-7855200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:7830600-7856200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:7830600-7857200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:7830600-7862200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:7830600-7862400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:7830800-7842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:7830800-7842800	Weak transcription	Esophagus	oesophagus
25	chr4:7830800-7854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:7831600-7842800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:7831600-7845800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr4:7832200-7845600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:7832200-7845800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:7832200-7854000	Weak transcription	Brain Angular Gyrus	brain
31	chr4:7832600-7845600	Weak transcription	Small Intestine	intestine
32	chr4:7833000-7845600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:7833600-7844200	Weak transcription	Left Ventricle	heart
34	chr4:7833600-7845600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr4:7833800-7844200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr4:7833800-7845600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr4:7833800-7855200	Weak transcription	Spleen	Spleen
38	chr4:7834200-7842800	Weak transcription	Fetal Heart	heart
39	chr4:7834200-7843000	Strong transcription	NH-A	brain
40	chr4:7834200-7843600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:7834200-7845400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr4:7834200-7845600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:7834200-7845600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:7834400-7845800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr4:7835400-7842800	Strong transcription	Fetal Muscle Leg	muscle
46	chr4:7835400-7842800	Strong transcription	Fetal Stomach	stomach
47	chr4:7835400-7846000	Strong transcription	Fetal Intestine Small	intestine
48	chr4:7835800-7842600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:7836000-7842600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:7836000-7842600	Strong transcription	HSMMtube	muscle

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