Variant report

Variant	rs143153716
Chromosome Location	chr2:148718044-148718045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:148717126..148719327-chr2:148720012..148722132,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv529388	chr2:148471340-148934846	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv3392562	chr2:148476961-148843061	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1009602	chr2:148668195-148844240	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv535967	chr2:148668195-148844240	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1000246	chr2:148669162-148780280	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv535968	chr2:148669162-148780280	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv1002358	chr2:148703807-148942372	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1004169	chr2:148705700-148811850	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv535970	chr2:148705700-148811850	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1007683	chr2:148717347-148942372	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv535971	chr2:148717347-148942372	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148637200-148752600	Weak transcription	Small Intestine	intestine
2	chr2:148647200-148719600	Weak transcription	Pancreas	Pancrea
3	chr2:148650200-148719600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:148653200-148719600	Weak transcription	Esophagus	oesophagus
5	chr2:148658800-148741600	Weak transcription	Aorta	Aorta
6	chr2:148659600-148719800	Weak transcription	Gastric	stomach
7	chr2:148661600-148718200	Weak transcription	Fetal Intestine Small	intestine
8	chr2:148664600-148721200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:148671800-148719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:148676200-148722400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:148678000-148718200	Weak transcription	Right Ventricle	heart
12	chr2:148679000-148718800	Weak transcription	Fetal Stomach	stomach
13	chr2:148679600-148737200	Weak transcription	Hela-S3	cervix
14	chr2:148681000-148729600	Weak transcription	NHDF-Ad	bronchial
15	chr2:148683000-148725200	Weak transcription	Fetal Heart	heart
16	chr2:148688200-148719800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:148688200-148728600	Weak transcription	NH-A	brain
18	chr2:148688800-148719600	Weak transcription	Thymus	Thymus
19	chr2:148691000-148734600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr2:148692000-148720200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:148692800-148719400	Weak transcription	HSMMtube	muscle
22	chr2:148693400-148722000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:148693800-148724200	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:148694000-148719600	Weak transcription	Fetal Brain Female	brain
25	chr2:148694000-148721000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr2:148694000-148725400	Weak transcription	Brain Anterior Caudate	brain
27	chr2:148694000-148731400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:148694200-148777400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr2:148694400-148720600	Weak transcription	Ovary	ovary
30	chr2:148694400-148725400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:148694400-148738400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr2:148694400-148741000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr2:148694400-148741200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr2:148694600-148720400	Weak transcription	Lung	lung
35	chr2:148694600-148731600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr2:148695000-148746800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr2:148696600-148721400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:148698000-148734000	Weak transcription	Brain Angular Gyrus	brain
39	chr2:148701000-148728200	Weak transcription	Osteobl	bone
40	chr2:148701000-148730200	Weak transcription	Placenta	Placenta
41	chr2:148703200-148718400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:148707000-148719600	Weak transcription	Spleen	Spleen
43	chr2:148707200-148719400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:148707600-148732200	Weak transcription	Stomach Mucosa	stomach
45	chr2:148708600-148719400	Weak transcription	Brain Germinal Matrix	brain
46	chr2:148709000-148718800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr2:148709000-148720800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:148709000-148721800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:148709000-148738400	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:148709200-148719400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links