Variant report

Variant	rs143319052
Chromosome Location	chr6:55298427-55298428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885903	chr6:55142337-55344782	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv885904	chr6:55156812-55344782	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv470819	chr6:55236937-55368815	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031179	chr6:55237283-55372905	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029436	chr6:55237283-55386038	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1028560	chr6:55237723-55378113	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024550	chr6:55237723-55387481	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv462948	chr6:55238091-55368815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv603163	chr6:55238091-55368815	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv5311	chr6:55259390-55304045	Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1018622	chr6:55297854-55320311	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55297800-55299000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:55298000-55298600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:55298200-55298600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:55298200-55298800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:55298200-55298800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:55298200-55298800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:55298200-55298800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:55298200-55299000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:55298200-55299000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:55298200-55299000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:55298200-55299000	Enhancers	HMEC	breast
12	chr6:55298200-55299200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:55298200-55299200	Enhancers	NHLF	lung
14	chr6:55298400-55298800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:55298400-55299000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:55298400-55299000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:55298400-55299000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:55298400-55299000	Enhancers	NHDF-Ad	bronchial
19	chr6:55298400-55299000	Enhancers	Osteobl	bone
20	chr6:55298400-55299200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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