Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1436174	0.83[ASN][1000 genomes]
rs1436176	0.88[ASN][1000 genomes]
rs1898190	0.88[ASN][1000 genomes]
rs1898191	0.88[ASN][1000 genomes]
rs2574875	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2574878	0.83[ASN][1000 genomes]
rs2574881	0.86[ASN][1000 genomes]
rs2662909	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2662917	0.85[ASN][1000 genomes]
rs2662922	0.85[ASN][1000 genomes]
rs2802560	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2802564	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2802740	0.86[ASN][1000 genomes]
rs2802741	0.88[ASN][1000 genomes]
rs2802742	0.88[ASN][1000 genomes]
rs2802745	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802747	0.83[ASN][1000 genomes]
rs2997477	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2997500	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3012183	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224980600-224988200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:224980800-224986600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:224981200-224989600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:224981400-224988200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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