Variant report

Variant	rs1436176
Chromosome Location	chr1:224981798-224981799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224980293..224982435-chr15:65595974..65597659,2	MCF-7	breast:
2	chr1:224976705..224978932-chr1:224981542..224984436,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200156	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1436166	0.81[AMR][1000 genomes]
rs1436167	0.88[ASN][1000 genomes]
rs1436173	0.88[ASN][1000 genomes]
rs1436174	0.94[ASN][1000 genomes]
rs1898190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2574874	0.81[AMR][1000 genomes]
rs2574875	0.95[ASN][1000 genomes]
rs2574878	0.94[ASN][1000 genomes]
rs2574879	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2574881	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2662909	0.94[ASN][1000 genomes]
rs2662917	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2662922	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2662923	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2662924	0.81[AMR][1000 genomes]
rs2802559	0.81[AMR][1000 genomes]
rs2802560	0.87[ASN][1000 genomes]
rs2802561	0.81[ASN][1000 genomes]
rs2802563	0.82[AMR][1000 genomes]
rs2802564	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2802730	0.90[ASN][1000 genomes]
rs2802740	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2802741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802745	0.95[ASN][1000 genomes]
rs2802747	0.94[ASN][1000 genomes]
rs2997477	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2997499	0.82[ASN][1000 genomes]
rs2997500	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3012183	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224980000-224981800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:224980600-224988200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:224980800-224986600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:224981200-224989600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:224981400-224988200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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