Variant report

Variant	rs1436251
Chromosome Location	chr3:25377424-25377425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11709169	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11709732	0.83[ASN][1000 genomes]
rs11717848	0.83[ASN][1000 genomes]
rs11718046	0.83[ASN][1000 genomes]
rs11718836	0.83[ASN][1000 genomes]
rs11720675	0.92[ASN][1000 genomes]
rs11721271	0.81[ASN][1000 genomes]
rs1483837	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17016204	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17016260	0.83[ASN][1000 genomes]
rs1905465	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1984597	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164476	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57697446	0.83[ASN][1000 genomes]
rs6550961	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550962	0.83[ASN][1000 genomes]
rs6550963	0.83[ASN][1000 genomes]
rs6550966	0.83[ASN][1000 genomes]
rs6771956	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6774199	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6799363	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7615094	0.83[ASN][1000 genomes]
rs7615609	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7623030	0.83[ASN][1000 genomes]
rs7649070	0.94[ASN][1000 genomes]
rs9818293	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9837851	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9848513	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25377200-25384000	Weak transcription	Fetal Lung	lung
2	chr3:25377400-25379800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links